Oncorhynchus nerka (sockeye salmon): 115137769
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Entry
115137769 CDS
T07952
Name
(RefSeq) LOW QUALITY PROTEIN: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase-like
KO
K15449
tRNA wybutosine-synthesizing protein 1 [EC:
4.1.3.44
]
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
one03016
]
115137769
Enzymes [BR:
one01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.3 Oxo-acid-lyases
4.1.3.44 tRNA 4-demethylwyosine synthase (AdoMet-dependent)
115137769
Transfer RNA biogenesis [BR:
one03016
]
Eukaryotic type
tRNA modification factors
Methyltransferases
115137769
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eIF-3c_N
Radical_SAM
DUF5089
DUF3280
CMD
Motif
Other DBs
NCBI-GeneID:
115137769
NCBI-ProteinID:
XP_029529946
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Position
LG11:complement(11328072..11389962)
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AA seq
413 aa
AA seq
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MSSSQDGYSVEKVVDVSKAQIFYGSQTGTAKCSNKLVCMFLLAVYTDGQPTENAEWFCKC
LEEASTDFRYGNAYLKGLRYVYGCHYNTVSKNVDKWLWMLSGIRVLSRGDGNCNVANSHN
GSVHADFLVWKTKFLSCLQALVAGQKKACSGNCKMGSSCKTRNRKKPQSSVFSYQAFPEQ
LSSEEELVESSSDEETAGSEENSPGSVIDVEDLGKILNGIKKAKKREQSQEDGQIVKLSR
LNGMMKAEEKEERRELITAALREALTAQGYKVIGSHSGDKRCHWTKSMLRGRGGCYKHSF
YGVEAHRCMESSLSLVCANKCDFCWRHHTNPVGTEWRWKMXPAEKILLEAVENHQNMFRH
LVPVTKLYVSVGAGTKGSLKKIDRLLFNNFWPRFLDSLKDLGEKLSFSPSLAQ
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcgagccaggatggttacagtgttgagaaagtggttgatgtatctaaagcacag
atattctatggatcacagactggaactgcaaagtgctccaacaagttggtctgtatgttc
ctattggctgtgtacactgacggacagcccacagaaaatgctgaatggttctgtaagtgt
ctggaggaggcatccactgacttcagatatgggaacgcctacctgaaaggactgagatat
gtgtatggctgccattacaatacggtgagtaagaatgtggacaagtggctgtggatgctg
agcggcatccgggttctgtccagaggagatggcaactgcaacgtagcgaatagccacaat
ggcagcgtgcatgctgactttctggtctggaagaccaagttcctgagctgcctgcaggcc
ctggttgcagggcagaagaaggcctgtagtggaaactgtaagatgggcagctcatgtaag
accaggaacaggaagaaaccacagtcctcagtcttctcctatcaggcatttccagaacag
ctcagctctgaggaggagctggtagagtccagtagtgacgaggagacagctgggtcagag
gagaatagcccaggctcagtcatcgatgtggaggatctaggaaaaatcttgaacggcatc
aagaaagccaagaagagagagcagagccaggaggatggacagattgtgaagctgtccagg
ctgaacggaatgatgaaggctgaggaaaaggaggagaggagagagttgatcactgctgcc
ctgagggaggccctgactgctcagggatacaaagtcataggaagtcactcaggagacaag
cgttgtcattggaccaagtccatgctaagaggaagaggaggttgttacaagcactccttt
tatggcgtcgaggcccacaggtgtatggagtcctcccttagcctcgtctgtgccaacaag
tgtgacttctgctggagacaccacactaacccggtgggcacagagtggcgctggaagatg
ngacctgctgagaagatactactggaggctgtggagaaccaccagaacatgttccgacat
ctggtaccggtgaccaagctgtatgtgagtgtgggtgccggcaccaagggcagtctgaaa
aagatcgaccggctgctcttcaacaacttctggccgaggttcctagacagcctcaaggat
ctgggtgaaaagctctccttctcgccttccctggcccagtga
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