Oncorhynchus nerka (sockeye salmon): 115138275
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Entry
115138275 CDS
T07952
Symbol
fancm
Name
(RefSeq) Fanconi anemia group M protein isoform X1
KO
K10896
fanconi anemia group M protein
Organism
one
Oncorhynchus nerka (sockeye salmon)
Pathway
one03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
one00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
115138275 (fancm)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
one03400
]
115138275 (fancm)
DNA repair and recombination proteins [BR:
one03400
]
Eukaryotic type
DSBR (double strand breaks repair)
FA (Fanconi anemia) pathway
FA core complex
115138275 (fancm)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FANCM-MHF_bd
DEAD
Helicase_C
ResIII
ERCC4
Motif
Other DBs
NCBI-GeneID:
115138275
NCBI-ProteinID:
XP_029530821
EnsemblRapid:
ENSONEG00000029204
LinkDB
All DBs
Position
LG12:complement(25285292..25353614)
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AA seq
2157 aa
AA seq
DB search
MSGVNQMTLFQTWGASVPQKVSQTNNVKKSSGRRKTTQNSRGSTAASVKTQKRETGITLP
PPAPRNTLWGEFDQGSTADSEVRDFEEVVAAAAEEDDDDLMVVAVYEAEKSLQIDGNLGQ
HSEHTTNVESTCLTQISSSGSTYYKDFPGLDSSSAKVWIYPTNYPIRDYQLKISEAALFQ
NTLVCLPTGLGKTFIAAVVMYNFYRWYPSGKIVFMAPTKPLVAQQIEACYKVMGIPQTHM
AELTGSTQAQQRQELWRSRRIFFLTPQVLVNDLSRATCPALHVKCVVIDEAHKALGNHAY
CQVVRQLGSQTQQFRILALSATPGGDTNSVQHVISNLLISHIELRSEESPDIQAHSHQRS
LEKVVVPLGESLAGHQALYLQVLERFTGRLIQNRAMSHRDLHSLTKYQLILAREQFRKNP
PPHVTGAQQGALEGDFALCISLYHGYELLLQMGLRSLFFYVQGIMDGTKEKSRARNELQR
NATFMDLYQEMAAMFGKPTGPEEPFIYSHPKLQKLEEVVLGHFKTWAESSSTGSGPQEVS
TRVMIFSSFRESVQEIAAMLNRHLPLVKVMTFMGQASAGKGVKGFTQKEQLEVMQRFREG
GFNTLVSTCVGEEGLDIGEVDLIVCFDAQKSPIRLVQRMGRTGRKRQGRIVVILAEGREE
RTYNQSQSNKRKVYKSIVGNSHSFHMFPHNPRMLPDGVHPALHKMHITCGQFDHRESSGR
LAGGWRGRRSHSLEGQRESLILPHDLVGHQESVKKDGFLSPSELTHWESTMKLGEGEAPP
ILRQSRFLSKQEGSPPRVELLSSGPTRELSLWEWRHWQNQPFPTHIVDHSNRCHHFTKVM
ELIDGLRQEEGESRYELELLPHLHKADVIGLTEEAQQEKSTKGKKQKEGKMTKSRTKMAN
LSHKQKTSCLSSADLDRVELKKEVQRESISKAGTTLVSPWTLIKNRVPSECHKEVTHDLR
DHPGLWPLSSTGDQPIMDMDFDCIILNNESESSEVNSPRDLESESVNCIAAVEQIDLNQL
TSIADREPKSDEDSELEALFYLPKWDAAVPKLQPLRQKLESLRVILVNVTELLSRSPPAL
HFDLDSPQFDPGPTPFTTKDCSHTLPVEPLDELLDVDQTFHVNFSLEVDEDFADPASQSP
NVDLDVGSLDCESHCEPPHQQHSASSPITVPAESMGRESALGSPSWDEVFEDDSNDIMED
DMDDKADFKPPCHPTQPKAQHSKTNLDESMDLFGDDGTFLQMTIPDIPTPGNVSIRLPSP
LKAPEREWLIGSSKSVTETTMVYQVKPSRSHASPVAQQEPAQDFENFVCSQDLFSVNFDL
GWEEDEGDTEAAPSPFPSKPSPPGSKKQEAPLSSTVNEPKISGSSTPHFSFHRKSVSTPL
AACLERKRADTSALASPQTSPLTSKSGALFSPIPTLGPRRVLLPGPSTTPSTSFSFLKRK
CQGTLQNAQTPKAQAGDPGNGSIEMGHSLSHKSILDPPHPGLCTSDSEEEVITRRRVHHH
VKANPLSSPVSMLLSDVDSPLQVTRKSKHAVARISDESDGEGEAMSDDDFQNTSVRQPRA
PPRVAVKPSASHGKAEQAVQHHHRGARHFLDEEAALSEGGEVSSDEEDGEEQNRSLEGFV
VSNTQCSQGINDSEMQGVYLKSVRSPAVAGKFKMIYKLNHNMDIFSQMPELDETYAEDSF
VVRGSDEEELGEEDEEVPLELIYEDSFVEGRRQYPTRRKALIRNIRAQAGSGPATLDKRA
ADPQPNPAGKNKRSRIVHLVDSSSEEEVEKSRNSVKAEGVAAICRLTELQQQNDWVFKAP
RQQMPPGGSTRASTASCVVGPRVLSGAKSSSMNSVMEPSAPSGTSRTSSVSSVRGPREEQ
QEERCRQRLHQQALLSEELDFEQSESLLLSSKQPQATSSTSSAPHVQSSFGQAATLSKPP
ASSSNPSGLVAVLVDSRCITACVDVVSSLRQRCAVTAHVCSLDGCDFVVSNRMAVERQCQ
SELAGMPNRKRLVERVTSLQSLFERVCLIVEKDRTKPSEASRPFQPTRYYDSTLASLVRA
GVRLLVSRGPEESATLLAELARVEQRKGQAISVPLEVKGHRQQALLFYRTLPCVSYVNAL
NMSHSFRSVGHLVNSSIEALQKGACVSRPRAEEIYRCLRYSCDTTLMTTNTPGKNNL
NT seq
6474 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtgtgaaccaaatgactttgttccagacgtggggagcatctgttccgcaaaag
gttagtcaaacgaataatgtaaagaagtcttccggacgacgaaaaacaacgcaaaacagc
aggggcagcacagcagcctcagtcaagactcagaaaagggagactggtataactttgccg
cccccggcgccccgtaacacgctatggggtgaatttgatcaggggtccacagctgacagc
gaggtgagagatttcgaggaggttgttgctgctgctgctgaagaagatgatgatgattta
atggtagttgctgtttatgaggcggaaaagtctttgcaaattgatggaaaccttggacaa
catagtgaacacacaacaaatgttgagagcacttgtctcacacagataagctcaagtgga
tcaacatattacaaagacttccctggccttgacagctcctctgcaaaggtatggatctac
cccaccaactatcccataagggactaccaactaaagatatcggaggcagctttatttcag
aatacgctggtatgcctccccactggcctgggcaagactttcattgctgctgtggtaatg
tacaacttttatcgatggtatccatctggaaagatagttttcatggcaccaacaaaaccc
ctggtggcacaacaaatagaagcgtgctacaaagtgatgggtattccacagacacacatg
gcagagttgacagggagcacgcaggctcagcagaggcaggaactgtggaggtccaggcgc
atcttcttcctcactccccaggtgttggtgaacgacctgtctcgagccacctgccccgcg
ctgcacgtcaagtgtgtggtgattgacgaggctcacaaggccctggggaatcatgcctat
tgccaggtggtgagacagttggggagccagactcaacagtttcgcatcctggcactcagc
gccacgccaggtggagacacaaattcagtgcagcatgtcatatccaacctgctgatctcc
cacattgagctgcggtctgaagagagccctgacatccaggcccactcccaccagcgcagc
ctggagaaggtggtggttcccttgggggagtcgctggccgggcaccaggcactctaccta
caggtactggaacggttcacgggccgtctgatccagaacagggcgatgtctcaccgcgac
ttgcactccctcaccaagtaccagctcatcctggcccgggaacagttccgcaagaaccct
ccgccccacgtcacgggggctcagcaaggggctctggagggggactttgccctgtgtatc
agcctgtaccatggctacgagctgctgctccaaatgggcctgcgctccctcttcttctat
gtccagggcatcatggatggcaccaaagagaagtctcgagccaggaacgagctacagcgc
aacgccaccttcatggacctgtaccaggagatggcggccatgtttggaaagcccaccggc
cccgaggagcccttcatctacagccaccccaaactgcagaagcttgaggaggtagtgctc
gggcactttaaaacatgggctgagagctccagcactggctctgggccccaggaagtgagc
acacgtgtgatgatcttttcgtcgttccgggagagtgtgcaggagattgccgccatgtta
aatcgccacctgcccctggtcaaagtcatgacctttatgggccaggcctcggcagggaag
ggggtcaaagggttcacccagaaggagcagctggaggtgatgcagaggtttcgggagggg
ggcttcaacaccctggtgtccacctgcgtgggcgaggaggggctggacatcggcgaggtg
gacctcatcgtgtgcttcgacgcccagaagagtcccatccgcctggttcagcgcatgggc
cgcaccggacgcaaacgccaagggcgcatagtggtcatcttggccgagggacgagaggag
agaacctacaaccagagccagagcaacaagcgcaaggtgtacaagtctatcgtggggaac
agccacagtttccacatgttcccccacaatccccgcatgctgcccgacggggtgcatccc
gccctgcacaagatgcacatcacctgtggccagtttgaccaccgggagagcagcgggcgg
ctcgccgggggttggagggggcgcaggtcccactccttggagggccaacgtgagtccctt
attcttccgcatgatctagtcgggcaccaggagagtgtgaagaaggatggcttccttagc
ccctctgagctcactcactgggagtctacgatgaaactgggggagggggaggctccaccc
attctaagacagtcccgcttcctctcaaaacaggaaggctcgccacctcgggtggagctg
ctctccagcgggccaaccagggagctgtctctgtgggagtggagacactggcagaaccag
cccttccccactcacattgtggaccactccaaccgctgccaccacttcaccaaggtcatg
gagctcattgacggcctgcgccaggaagagggtgaaagcagatatgagttggagctgctg
ccccacctccacaaagcagatgtcataggcctcacggaggaagcacagcaggaaaagtcc
accaaaggaaagaagcagaaagagggaaaaatgacaaaatccagaaccaaaatggccaac
ctgagccacaagcagaagacttcctgcctttcctcagctgacctagaccgtgtagaactc
aaaaaggaagtgcagagggaaagcatttctaaagcaggaacaaccttagtctctccatgg
accctgataaagaacagagtcccttcagaatgtcacaaggaggtgactcatgacctcaga
gatcacccaggcctctggccactctcctccacgggtgaccagcctatcatggacatggat
tttgactgtatcatactcaacaacgagagtgaaagttcagaggtcaattctccaagggat
ttggagagtgaatcagtgaactgcattgctgctgtagaacagattgacctcaatcagttg
acctcaattgcagaccgtgaacccaagtcagatgaagattctgaactggaggctttgttt
tacttgcccaaatgggatgctgctgtccccaagttgcagcccctgagacagaagttagag
agcttgagggtcattctagtcaacgtgacagagcttctgtctaggtctcctccagctttg
cactttgacctggacagccctcagtttgaccctgggcccacccccttcaccaccaaggac
tgttcacatacgcttccggttgaacctctggatgaactcctggatgtagatcagacattc
cacgtgaatttctccctggaagtggatgaggactttgccgatcctgcttctcaatctccc
aatgttgatttagacgttggttctctagactgtgaaagccattgcgaaccacctcatcag
cagcactccgcttcatcacccattactgtgccagcagaaagcatgggtagggaaagtgcc
cttggcagccctagctgggatgaggtcttcgaggatgacagcaatgacataatggaggat
gatatggatgataaagcggacttcaagccaccatgtcatcccactcagcctaaagcccag
cactctaaaaccaacctggacgagagcatggacctgtttggagatgacggcaccttcctc
cagatgaccattccggacatccctacgccagggaacgtcagtatccgactacctagcccc
ctgaaggctccggagagggaatggttaatagggtcaagtaaaagtgtgacagaaacaacg
atggtgtatcaggtcaaacctagtcgtagccatgcttctcctgtagcgcagcaggaacct
gctcaggactttgagaactttgtctgttctcaggatttgttctctgtcaactttgatttg
ggctgggaggaggatgaaggggacacagaggctgctcctagtccattcccctcaaaacct
tcaccccctgggtccaaaaaacaggaagcacccctttcttccacagtgaatgagccaaaa
atctctggctcatccactccccactttagtttccataggaagagcgtgtccacacccctg
gcagcctgtctggaaaggaagagggcagacacctctgctctggcttcgcctcagacctct
cctctgacctccaagagcggagctctgttctcaccaatccccacattaggaccgaggcga
gttctcctgcctggtccttccaccaccccatccacttcgttctcattcttaaagaggaaa
tgccaggggaccttacagaatgcccagactcccaaagctcaggcgggggacccaggaaat
ggttcaatagagatgggacacagtttgtctcacaaatccatcttggacccccctcatcca
ggcctgtgcaccagtgacagtgaggaggaggttatcacccgtaggcgggttcatcatcat
gtcaaggcaaaccccttgtcttctcccgtgtcaatgcttctcagtgatgtggattctcct
ttacaagtgaccaggaagtcaaagcatgcggtggcacgcatttcagatgagagcgacggg
gagggggaggcgatgtctgacgatgacttccagaatacctctgttcgacagccaagagcg
cccccccgtgtggctgtgaaaccatccgcgtcgcatgggaaagctgagcaggccgtgcag
caccaccaccgaggagcccgtcactttctggacgaggaggcggcgctgtccgaggggggg
gaggtgtcatctgacgaagaggacggtgaagagcagaaccgctcactggagggcttcgtt
gtgagcaacacccagtgctcccagggaatcaacgattctgagatgcagggggtttaccta
aagtcagtgagaagccctgctgtggctggcaagttcaaaatgatctacaagctaaaccac
aacatggacatcttctctcagatgcctgagctggacgagacatacgcggaagacagcttt
gtggtgaggggaagtgatgaggaagagctcggcgaggaggatgaggaggtcccattggaa
cttatctacgaggactcgttcgtggaggggaggaggcagtaccccaccagacgcaaggcg
ctgatccgaaacatcagggctcaggctgggagcgggcctgccactctggacaagagggct
gctgaccctcaacctaatcctgctgggaaaaacaagcgctcccgcatagtgcatttggtg
gactccagctcggaagaagaagtggagaaaagtagaaatagtgtgaaagctgaaggtgtt
gctgccatctgcaggctaactgagttacagcaacagaatgactgggtgtttaaagctcca
cggcagcagatgccccctggtggatccaccagagcctccacagcgagctgtgtggtgggg
cctagagtcctcagtggagccaagtcctcctctatgaactctgtgatggagcctagcgcc
ccaagtggaaccagcaggacctcctcagtgagctccgtgaggggacctagagaggagcag
caagaagagaggtgtcgccagaggctccatcagcaggccctcctgtctgaggagctggac
tttgagcagtcggagtctctgttgctctcaagtaaacagccacaggctacctcctccacg
tcctcagcaccccacgtccagagctccttcggtcaggccgccactctaagcaagccccct
gcctcgtcatcgaacccatcgggccttgtcgctgtactggtggacagccgctgtatcaca
gcctgcgtggatgtggtctccagcctgcgccagcgttgcgctgtcacggcccacgtgtgc
tcgctggatggctgcgacttcgtggtcagtaaccgcatggcggtcgaaaggcagtgccag
tcggagctggccgggatgccgaaccgcaaacggcttgtggagagggtgaccagtttgcag
agcctatttgagcgggtctgtctcatcgtagagaaggaccgcaccaaaccaagtgaagct
tcccgtcctttccaacctacacgctactacgacagcacactggccagtttggtgagggca
ggcgtccgactcctggtgagtagggggcctgaggagagcgccaccctactggctgaactg
gcccgagtggagcagaggaagggccaggctattagcgtgccattagaggtcaaaggtcac
cggcagcaggcgctactcttctaccgaacgctgccctgtgtcagctatgtcaatgccctc
aacatgagccacagcttcagatcggtgggccacctggtcaacagctctattgaggcttta
cagaagggggcgtgtgtgagccgccccagagccgaggagatctaccgctgcctacgctac
tcctgtgacaccaccctgatgactacaaacacacccgggaagaacaacctttag
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integrated database retrieval system
