Oncorhynchus nerka (sockeye salmon): 115142029
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Entry
115142029 CDS
T07952
Name
(RefSeq) single-minded homolog 1-A-like
KO
K09100
single-minded
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115142029
Transcription factors [BR:
one03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
115142029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SIM_C
PAS_3
PAS_11
PAS
PAS_9
HLH
PAS_4
Per3-like_PAS-A
Motif
Other DBs
NCBI-GeneID:
115142029
NCBI-ProteinID:
XP_029537361
EnsemblRapid:
ENSONEG00000028869
LinkDB
All DBs
Position
LG14:4415651..4442961
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AA seq
777 aa
AA seq
DB search
MKEKSKNAARTRREKENSEFYELAKLLPLPSAITSQLDKASIIRLTTSYLKMRIVFPEGL
GESWGHVSRTRSLDNVGRELGSHLLQTLDGFIFVVAPDGKVMYISETASVHLGLSQVELT
GNSIYEYIHPADHDEMTAVLTAHQPCHSHFVQEYEMERSFFLRMKCVLAKRNAGLTCGGY
KVIHCSGYLKIRQYSLDMSPYDGCYQNVGLVAVGHSLPPSAVTEIKLHSNMFMFRASLDM
KLIFLDSRVAELTGYEPQDLIEKTLYHHVHSCDSFHLRCAHHLLLVKGQVTTKYYRFLAK
QGGWVWVQSYATIVHNSRSSRPHCIVSVNYVLTDTEYKGLQLSLDQVTDTKPSFPFSSAP
TSLTENRRAPKSRVSRAKAKARLSPYTQYTGFQAERSESDQDSPWAGSPLTDSASPQLLE
QREGLSASCAYRQFSEPRPLCYSLPITEEHHHHIPSESHPHLDRHGHNQTCERGRCEAGR
YFLGAPQGGTEAWWGAARSVLPLAKTSSLENGEGYESSVPHITSIHSLHNCGQWDQDSVV
SSPDGGSASDSGDRYRADYFRVSPQEPSKIETLIRATQQMIKEEENRLQHRSKLHPGPDT
PLGPANGLPKGPGPSFTTDYPQGVLHSVLCRGLGQVISPASSPAPLSRLSSPGSDPLLPK
PKNYLQQTGQTDLSPHPQPLHHQLGCPGPCSDSSPTPAPALYPSHPQTQTGRPYLDKQAA
AYSLTGYALEHLYDPKSLRDFCSSAGSTHYDVTSHLRMQAEQGPGHKGTSVIITNGS
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaatcgaaaaatgctgcccggactcgacgggaaaaggaaaatagtgaattc
tatgagctggccaagctgttgcctttaccttctgccatcacgtctcagcttgataaagct
tcaattattcgactcacaacaagttacttgaaaatgagaatcgtttttcctgaagggctg
ggagagtcctggggccacgtgagtcggaccaggtctctggataatgttgggcgagagctg
ggatcacatctgttacagacgttggacgggttcatttttgtggttgctcctgacgggaaa
gtaatgtacatatctgaaacagcatcggtccatttgggcttatcacaggtagagctgacc
ggaaatagtatttacgagtacatccaccccgctgaccacgacgaaatgacagccgtgctg
acagctcaccaaccctgccactcgcactttgtccaagaatatgaaatggaacgttcattc
tttctgagaatgaaatgcgtcctcgcgaaaagaaatgctggtctgacatgtggtggatac
aaggtgatccactgcagcgggtacctaaagatccgtcagtacagcctggacatgtctcca
tatgatggctgctatcagaacgtgggcttggtggcggtgggccactctctaccccctagc
gctgtcactgaaatcaaactacacagcaacatgttcatgttcagagccagcctggatatg
aagctcatcttcctcgactccagggtagctgagctgacaggctatgagccccaggatctt
atagagaagacgctctatcaccatgtccatagctgtgactccttccacctgagatgtgca
caccacttgttgctggtgaaaggccaagtgaccactaagtactataggttcctggctaag
cagggtggctgggtttgggtccagagctatgccaccatcgtacacaacagccgttcctcc
agaccccactgtatcgtcagtgtcaactacgtcctgacggatactgagtataaaggactc
cagctgtctctggaccaggttacagacaccaagccctccttccccttcagcagtgctccc
accagcctcactgagaaccgcagagcacccaagagcagagtgtcccgagctaaggccaag
gctcgactgtccccctacacacagtacactggtttccaggccgagcggtcagagtcggac
caggatagtccttgggcaggatctcccctcacagactccgcttcccctcagctgctggag
cagagggaggggcttagcgcctcctgtgcctacaggcagttctccgagccacgtcccctc
tgctacagcctcccaatcactgaggagcaccaccaccacatccccagcgaaagtcacccc
cacctcgacagacacggccacaaccagacgtgcgagcggggccgctgtgaggcagggagg
tacttcctgggtgctccccagggtgggacagaggcgtggtggggagctgcccgctctgtg
ctgcccctggccaagacctcgtccctggagaatggagagggatacgagagcagcgtgccc
cacatcacctccatccacagtctgcataactgtggccaatgggaccaggacagtgtggtc
agctcgccagacgggggctccgccagcgactcaggggaccgttaccgcgcagactacttc
cgggtcagcccccaggagccgagcaagatcgagaccctgatccgagccacgcagcagatg
atcaaggaggaggagaatcgtctgcagcaccgcagcaagctccacccaggccctgacact
cctctaggtcctgccaacggcctcccgaagggccccggacccagcttcaccactgactac
ccccagggagtgctacatagcgtgttgtgccgtggcctgggtcaggtgatcagccccgca
tcaagccctgcccctctctccaggctcagcagcccagggtctgatcccctcctccccaag
cccaaaaactacctccaacagacaggacagacagacttgtcccctcacccccagcccctg
caccaccagcttggctgtccaggcccctgctcagactcctcccctacccctgccccagcc
ctctacccttcccacccccaaacccaaacggggaggccctatctggacaagcaagctgct
gcctactccttgacgggctatgccctagagcacctgtatgaccccaagagcctcagggac
ttctgttcctccgctggctccacccactacgacgtgacttcacacctgcgcatgcaggca
gagcaggggccgggacacaaggggacctccgtcatcatcaccaacggcagctaa
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