Oncorhynchus nerka (sockeye salmon): 115143240
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Entry
115143240 CDS
T07952
Name
(RefSeq) transcription factor SOX-13-like isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
one
Oncorhynchus nerka (sockeye salmon)
Brite
KEGG Orthology (KO) [BR:
one00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
one03000
]
115143240
Transcription factors [BR:
one03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115143240
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
115143240
NCBI-ProteinID:
XP_029539270
EnsemblRapid:
ENSONEG00000034672
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All DBs
Position
LG15:complement(38799951..38849444)
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AA seq
661 aa
AA seq
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MTCYSITSALLWRGPLGLGTSTLTAPKRMVEPSPPALHLHASGDVSMVGVSVKLEESGGE
GGGAHTRAEQLSSPACDWSGHQPMERPESRQLTPPLSRSPSEGSPGKEQLLRQSPVGMKG
GSRGYNHRPEGHMHPTVSEVMPTIEKLLSVDWREKFLDKSPLGGNHLKGTPESLAEKELQ
LLLMINQLGGLREQLLGAHSEQRNMAALLLEKQQQQMELARQQQEQIAKQQQQLIQQQHK
INLLQQQIQQVNMPYVMIPAFHPNTQQLPVTADNQMTMPLQPIPCKPVDYPMQLLQNSHS
TPVKRPSGTFRQEASQPLNLTSKPKGMDMGKSPSPQIFELGSLTLQGGYRPRDNHRDSPS
RPALNLGFLGEGDVVTQAIHDAQQLLWSHGPGGRERERERDCTARMEHKESGRSDRLPHQ
DRGENRQTRQTNEDHHSSDSEGPLSAPGVGLFAEVRSPPSSVHIKRPMNAFMVWAKDERR
RILQAFPDMHNSSISKILGTRWKSMSNQEKQPYYEEQARLSRQHLERYPDYKYKPRPKRT
CIVEGRRLRVGEYKAMMKSRRQEQRGAYTHSQSEPQKLHYAPGEGQYPGGGGTVSMPTVP
FHPALLEHYLPRGLEAPPPRRLDGQITPTPLHRERERPPYSEGEESDRGERSEGELVLLT
D
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgacgtgttacagcatcaccagtgctctactgtggaggggtcctctgggtctggggacc
tccacactcaccgcaccaaagagaatggtggagcccagtcccccagcgctgcatctccat
gccagcggtgatgtcagcatggtgggcgtcagtgtgaagttggaggagtctggaggagaa
gggggaggagcccataccagggcagagcagctctcctctcctgcctgtgattggtcagga
catcagccaatggaacgaccagagtctagacagctgactcctcccctctcccgctcaccc
tcagagggctctcctggtaaggaacagcttctcagacagagtcctgttgggatgaagggg
ggcagcagggggtacaaccaccgaccagagggacacatgcaccccactgtcagcgaagtc
atgcccaccatagagaagcttctgagtgtggactggagggagaaatttctggacaaaagc
cccctgggaggcaaccacctgaaaggcactccagagtctctggcagagaaggagctgcag
ttgttattgatgatcaaccagctgggtggtctgagggagcagctgctgggagcccactct
gagcagaggaacatggctgccttgctgctggagaaacaacagcagcagatggagctggcc
agacagcagcaggaacagattgccaaacagcagcagcagttgatccagcagcagcacaaa
atcaacctgcttcagcaacagatccagcaggttaacatgccctacgtgatgatcccagcc
ttccaccccaacacccagcaactccctgtcactgccgacaaccagatgaccatgcctctg
cagccaatcccctgcaagccagtggactatcccatgcagctgctgcagaactctcactcc
acccctgtgaaaaggcccagtggtaccttccgtcaggaagccagccagcctctgaatctg
acctccaagcccaaggggatggacatggggaagagccccagcccgcagatctttgagctg
ggctcgctgactcttcagggtgggtacagacccagggacaaccatagagacagcccttca
cggcctgcacttaacctaggtttcctgggagagggggatgtggtgacccaggccatccac
gatgcccagcagctgctgtggagtcatgggccgggcggaagagagagggagcgagagaga
gactgcactgccaggatggagcataaggagtctggtcgcagcgacaggctgccacaccaa
gaccggggagagaacagacaaacccgccaaaccaacgaggaccaccacagcagtgactct
gagggccccctgtctgctcctggtgtggggttgtttgcagaggttcgcagtcccccctcc
tccgtccacatcaagaggcccatgaacgccttcatggtctgggccaaagacgagaggcga
cgtatactacaggccttccctgacatgcacaactcctccatcagcaagatactgggaact
agatggaagtctatgtctaaccaggagaagcagccctactatgaggagcaggccaggctg
agccgacagcacctggagcgttaccccgactacaaatacaagccccgccccaaacgcacc
tgcatcgtggaggggcggagactcagggtgggcgagtacaaagccatgatgaagagcagg
agacaggagcagagaggggcatacacacacagtcaatcagagccgcagaagctgcactac
gccccaggcgagggccaatacccaggcggcggtggaacggtctccatgccgacggtgcca
ttccaccccgcgctattggagcactacctgccacgagggttggaggctccgcctcctcgc
agacttgacgggcagatcacacccactcccctccacagagagagggagagaccaccgtac
agcgagggggaggagagtgacagaggagagaggagtgagggagagctagttctcctcact
gactga
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