Oreochromis niloticus (Nile tilapia): 100696048
Help
Entry
100696048 CDS
T06104
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X2
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03022
Basal transcription factors
onl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
100696048
09124 Replication and repair
03420 Nucleotide excision repair
100696048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
onl03021
]
100696048
03400 DNA repair and recombination proteins [BR:
onl03400
]
100696048
Transcription machinery [BR:
onl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
100696048
DNA repair and recombination proteins [BR:
onl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
100696048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
IBR
Motif
Other DBs
NCBI-GeneID:
100696048
NCBI-ProteinID:
XP_003459052
Ensembl:
ENSONIG00000010450
UniProt:
I3JW89
LinkDB
All DBs
Position
LG12:complement(3549591..3556492)
Genome browser
AA seq
392 aa
AA seq
DB search
MDEEPERAKRWEGGYERTWEVLKEDESGSLKATVEEILYQSKRKRVIESHGQVRLGMMRH
LYVVIDCSRSMEDQDLKPNRLTSTLKLMEAFVDEYFDQNPISQVGIITTKNKRAEKLTDL
AGNPKKHITALMKAVDTVCVGEPSLYNSLNLAIQTLKHMPGHTSREILIILSSLTTCDPA
NIYELIKTLKSLKVRVSVIGLSAEVRVCTVLTRETGGSYHVILDESHFKELLMLHIKPPP
ASSSSECSLIRMGFPQHTIASVTDQDAKPSFSMSHLDSSSGPGLSLGGYFCPQCHATYTE
LPVECKVCGLTLVSAPHLARSFHHLFPLQAFIESPVENLQGDRFCQACQAELKDKSVFSC
PSCHSVFCVECDLFIHESLHCCPCCIYRQTAP
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagaaccagagagagccaagcgctgggaagggggctatgagaggacatgggaa
gtgctcaaggaggacgagtcaggctcactcaaagccacagtggaagagatactgtaccag
tccaaacggaaaagggtgatagagagccatgggcaagtgaggcttggaatgatgcgtcat
ctgtatgtggtgattgactgttcacgcagtatggaagaccaggacttaaaaccaaatcgc
ctcacctctactctcaagctcatggaagcatttgttgatgaatattttgaccaaaatccc
atcagccaggttggtattatcaccacaaagaacaaaagggctgagaagctgactgatctg
gcaggaaatccaaagaagcacatcactgctctgatgaaagctgtggacactgtttgtgta
ggagagccgtccctctacaattccctcaacctggccatacaaaccctcaagcacatgcct
ggacatacgagccgggagatcctgatcatcctcagtagtctcaccacatgtgacccagcc
aacatctatgagcttatcaagacgctgaagtctctgaaggtgcgggtgtctgtcatcggt
ctgtcagcagaggtccgggtgtgtacagtgctgacgagagagacaggcggctcgtaccac
gtgatcctggatgagagccactttaaagagctgctgatgcttcacatcaaacctcctcct
gccagctcctcctctgaatgctctttaatccgcatgggttttcctcagcatactattgcc
tctgtgactgaccaggatgccaagccttcgttcagcatgtctcatctggacagcagcagt
ggtccaggtctgtctctgggaggatatttctgtccgcagtgccacgccacttacactgag
cttcctgtggagtgtaaagtgtgtggtttgactctggtgtcggccccccatctcgccaga
tcctttcaccacctcttccccctccaagcttttatagagagtccagtggagaacctccaa
ggagacaggttctgtcaggcatgtcaagcagagctgaaggataaaagtgtgttcagctgt
ccatcgtgtcacagtgtgttctgtgtggagtgtgatctcttcatccacgagtctctgcac
tgctgtccctgctgtatttaccgccagactgctccctga
DBGET
integrated database retrieval system
