Oreochromis niloticus (Nile tilapia): 100697306
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Entry
100697306 CDS
T06104
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03013
Nucleocytoplasmic transport
onl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100697306 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
100697306 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
onl03019
]
100697306 (thoc1)
03041 Spliceosome [BR:
onl03041
]
100697306 (thoc1)
Messenger RNA biogenesis [BR:
onl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
100697306 (thoc1)
Spliceosome [BR:
onl03041
]
Complex C
Other components
EJC/TREX
100697306 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
100697306 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
100697306
NCBI-ProteinID:
XP_019203024
Ensembl:
ENSONIG00000009440
LinkDB
All DBs
Position
LG18:19578709..19589316
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AA seq
662 aa
AA seq
DB search
MSPSSFNFVDAKDKFTCSMSRVVTITDEAKLTQTLTNDAVLFFNQIPGNEAEKKTTLDQA
LRGVLGDLIVEQKLRCDDYLALIYLSIDGVTEGICSATTPFVLLGDVLDCLPLDLCDKIF
SFVEENVSTWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKS
GLNLQSQFNLDNITVFNKNEQESTLGQKHTEEKEDGMEVEEGEMGEDDGPAPSSIPIDYN
LYRKFWTLQDYFRNPVQCYDKFSWMTFLKYSDETLAVFKSYKLDDMQASKRKLEELRASS
GEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCVLNDDQAAW
IEETTKLVYQLLREIPPDGDKFAAMVEHILNTEENWNAWKNEGCPSFVKERTVDDKPKRP
TRKRQAPEDFLGKGPDRKIFMGNDELTRLWNLNHDNMEACKSDSREFMPSLDEFFAEAIE
QADPANMVEEEYKVVRNANYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKE
LPKDIPSEEIKTGEEDDDDNGDNLLKDSNDSPSIQSKLVTNQQMDDVAAKLGAQWKNLAS
HLEMKAAELREIETDSEDVDMQAKLLLVAWQDREGTQATVENLVAALNATGFSQIADGLS
EA
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgtcttcatttaattttgtcgacgctaaagacaaatttacgtgtagcatgtcg
cgtgttgttaccataacagatgaagctaagctaacacagacgctaaccaacgatgccgtt
ttattttttaaccagatccccggcaatgaggcggaaaagaagacaaccctcgatcaggct
ctgaggggagttcttggtgatctgattgttgagcaaaagttgaggtgtgatgactaccta
gctctcatttacctgagcattgatggcgttacagaaggtatctgttctgctacgacccct
ttcgtcctgctgggagacgtgctggactgtcttcctttggacctgtgtgacaaaatcttc
tcttttgtcgaagagaacgtctccacctggaaatcgaactccttttacactgcagggaag
aattatttattgaggatgtgcaatgatctcttaaggaggctgtccaaatctcagaacaca
gttttctgcgggcgaatccagctcttcctggcacgtctcttccctctgtctgaaaaatca
ggtctaaatctccagagccagtttaatctagacaatataacagtgttcaacaaaaatgaa
caagaaagcactctcggccagaagcacacagaagaaaaggaggatggtatggaagtggag
gaaggagaaatgggagaggatgatggccctgcaccgagctccattccaatcgactacaac
ttgtacagaaagttctggacactgcaggactacttcagaaatccagtgcagtgttacgat
aaattctcatggatgacattccttaagtactcagatgagactctagcagtattcaaaagc
tataagctggatgacatgcaggcctctaagaggaagctggaggagctgagagcatcaagt
ggagaacatgtttactttgccaagttcctcacaagtgagaagctgatggacttgcagctc
agcgacagcaacttcaggcggcacatactgctgcagtacctcatcctcttccagtacctg
aagggtcaggtcaagttcaaaagttccagctgtgttctgaatgatgaccaggctgcatgg
attgaagagacgactaaactggtctatcagctgctgagggagattcctcctgatggtgac
aagtttgctgccatggttgagcacatcctcaacacagaggagaactggaatgcctggaaa
aacgaaggatgtccgagctttgtgaaagagagaacagtagatgacaagcccaaaaggccc
acaaggaaaagacaagctccagaagacttccttggaaaagggccagaccggaagattttt
atgggaaatgatgagttgactcggctgtggaacctcaatcatgacaacatggaggcctgc
aagtcagacagcagagagttcatgccgtcattggatgaattctttgcagaagctattgaa
caggccgacccagccaacatggtcgaggaggagtacaaggttgtgcgaaatgcaaactat
ggctggcgggctttgaggctgctgtccaggagaagtccacacttctttcagccaacaaac
cagaagtttaagagcctggcagactacctcgacagcatggtcagcaagttggccaaagag
ctaccaaaggacatcccatctgaagaaataaagacaggagaagaggatgacgacgataat
ggagacaatctgctcaaagacagcaatgacagtccgagcattcagagcaaacttgtgacg
aaccagcagatggatgacgtagcagccaaactgggcgctcagtggaagaacctcgcttct
catttggaaatgaaggcggccgagttgcgagaaatcgaaacggacagtgaagatgtcgac
atgcaggccaaactgctgctggtggcctggcaggacagagagggaacacaagctactgtg
gagaacctggtcgcagctctgaatgccaccggtttctcccagattgcagacggcctcagt
gaggcttaa
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