Oreochromis niloticus (Nile tilapia): 100698485
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Entry
100698485 CDS
T06104
Name
(RefSeq) collagen alpha-1(XII) chain isoform X1
KO
K08132
collagen type XII alpha
Organism
onl
Oreochromis niloticus (Nile tilapia)
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
onl00535
]
100698485
Proteoglycans [BR:
onl00535
]
Extracellular matrix (ECM) proteoglycans
Others
100698485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
fn3
VWA
VWA_2
Collagen
Pur_ac_phosph_N
Interfer-bind
Motif
Other DBs
NCBI-GeneID:
100698485
NCBI-ProteinID:
XP_019204552
Ensembl:
ENSONIG00000008087
LinkDB
All DBs
Position
LG19:28297428..28344810
Genome browser
AA seq
3110 aa
AA seq
DB search
MKIGLSLATAAILAALLSSIDAQVEPPSNLKFHILNENTVEMSWVRPSATIEGYRIQVQV
PDGDEPTREFTLAASATMTSLTDLTPDLDYSVSINSYYGSEESISIYGQLTIQSSNSSGR
VRRPQADAIKCSVSAIADLVFLVDGSWSVGRENFKHIRSFIGSLAGAFDIGEDKTRVAVV
QYSSDTRTEFPLTRYTRRGDLLQAINSLPYKGGNTMTGDAIEYLVRNIFTEAAGSRKAFP
KVAMIITDGKSQDPVEEHARRLRNIGVEIFVLGIKGADEDELREIASTPHSKHVYNVPNF
DMIQEVQKEIITQVCSGVDEQLNFLVSGEEMVEPASNLKVTEVSSKSMRVTWDSSLGDIT
GYKLTLIPMLPGMKRQELYIGAGQTSVNVRDLSPETEYEINLYALKGLTPSEPITELEKT
QPVKVSTECSLGVDVQADVVLLVDGSYSIGLQNFAKVRAFLEVLVNSFDIGPNKIQISLV
QYSRDTYTEFALNTHHDINAVVRAVRTFPYRGGSTNTGRAMTYVREKIFVPARGARQNVP
RVMVLITDGKSSDSFRDAATKLRNIDVEIFAVGVKDAVRSELEAIANPPSETHVYEVEDF
DAFQRISKELTQSICLRIEQELLNIKKRSLLPPSDLRFSEITSRSFRATWVPPLANVLSY
LLRFRKAEDVTGDYISLALPGDTNTAVLPHLYPLTTYEVNVFAQYDKGDSFPLTGEETTL
EEQGAVRSLRVTDETTNSFKVSWQAAPGSVIRYRLSYVPLSGTGEILEAQTLGPETTIVL
QELFPITTYRVSVSAEYASGLGSEMQVDGTTKEVRGSPRDLRVFNETISTMKLTWRAAPG
NVLQYRIAFKPAEGGERKEISVKGDTTQAVLKNLQPATEYELFVSARYSSGLGEPLLGTG
TTLEELGSPRDLVTSDVTDTSFAVSWTAAPGNVRQYRVMYKSLFTTESGEAVIPGSSTTT
VLKGLTPETRYEVSVFAVYGHGRGQPLVGEETTDVSAAGRAIVVSEETEKSMKVTWQPAP
GNVVNYRVTYKPQAGGRQLAAKVPGGTTTTVLRRLTHLTTYDITVVPVYRSGEGKARQGE
GTTLTPYKGPRNLQTSEPTKTSFRVTWDHAPGDVKGYKVTYHPVEDDINLGQLLVSPYDN
TVVLEELRAGTKYTVSVFGMFEGGESMPLAGEEYTTYSDAPDPPPFDTPNTMCRTNAQAD
IVLLVDGSWSIGRLNFKTIRAFIARMVGVFDIGPDRVQIGLAQYSGDPKTEWHLNAHQTR
ESLLDAVSNLPYKGGNTLTGLALNYILQNNFKEDVGMRPSARKIGVLITDGKSQDDVIVH
SQNLRDQGIELYAIGIKNADENELRSIASEPNDIHMYNVADFSFLLDIVDRVSDNLCNSV
KGPGGAPDAPTNLVTSEVTHQSFRVTWDGPDDQPEKYRVEYRTLSGAPQQVIVDGSQTTV
VLQRLNPLTQYLVSVYSVVGEESSDALDGKETTLPLSAVRRMEIYDQQVTTMRVRWERAP
GATGYMLLYSAINATQATTEQEIRVGGDTTDVQLVKLLPNTAYTLSLFALHGESASEPLT
KQGVTLPMPPAGELRVRDITHSTMTLDWDAAPGPVRKYLITYKPESGEAKELEVGGRVTS
RQLDNLISQTEYTLAVTPIYDEGPGQPMLGEAITDVVPAPKNLRFSEVTHTSFRAHWEHG
APDVALYRIGWVKKGDTHTQYAILNNDETTHLLENLESDTPYDVSVTAIYPDESESEDLL
GTERTLRRQNGSPLPVPPPTNLVVYNETTTTLNAMWTPPTGRVQNYKISYVPTSGGRTQT
TQVGGKKTTVLLPKLTPDTEYAISVVAVYAKGPSGPLEGIGKTKPLGGVRNLRVTDPTTS
TLNVQWEPAEGSVRQYRIFYVPAAGGVEDMVQVSGSTYSTVLRNLDSDTVYTVSVVPVYA
AGEGLRMSENGKTLERSPVRNIQVYNPTTNTLNVRWEAATGPVQQYRVVYSPLNGARPSE
SILVPGTTTTALLQQLLPNTDYNVGVVALYSDGEGPAISDAGKTLPRSAPRNLRVYDPTT
TTLSVSWDHADGPVMQYRITYAQITGDPIEEYTTVPGNRNNVILQNLDPDTPYNIKVTAV
YADGPGGEVDGDGRTVGMLGPRNLRVSDEWYTRFRVSWDPAPSRVNGYKIIYQPEGSDQS
MEVSVGDVTSHQLHNLKPGTTYDLKVLAQYNTGDSAPLVGQGTTLYLNVTDLNTYNVGYD
SFCLRWAPHRAATSYRLKVNPFDTSRSGAQEITVRGSENSYCFDGLTPDTLYNATVYTQT
PNLEGPGVSVKERTLVKPTPVPTEAPTPPPPATVPPALDVCKGAKADLVFLIDGSWSIGD
DSFNKVLQFVTSMTAAFDVISPKGMQVSFVQYSDDAKTEFKLNTYHDKGIVISALQGVRY
RGGNTKTGIALKHVYEKVFISDSGMRRNVPKVLVVVTDGRSQDEVKKSAEKLQHSGYSVF
VVGVADVDMTELRNIGSKPSERHVFVVDDYDAFAKIQDNLITFICETATSTCPLIYINGF
TTPGFRMLEAFNITDRTFAAMNGVSMEPGSFNSYIAYRLHKDSFLNQPTKEIHPDGLPPS
YTIILLFRLLPDTPSEPFDIWQIADKNNNPEVGVTVNPSSKTVTFYNKDTRGEIQRATFN
EQQVRQVFHGSFHKLHITVSPEKVKLNIDCQEVAEKPIKEANNITLDGYEVLGKMVKSGG
GRRQSATFQLQMFDIVCSLSWISRDRCCDLPATRDEAKCPSLPHSCTCTQDSIGPQGPPG
PSGSPGTKGPRGDRGDPGKPGSMGPRGEQGLPGPMGPPGPQGPNGLSLPGEPGRPGPKGD
PGDPGLPGLQGPPGQRGPLGPVGPSGARGPPGKEGPSGPRGPSGPMGNPGNPGVPGITGK
PGKPGDPGSPGPVGLKGEKGERGDFASQNMMRSIARQVCEQLVNSQMSRVDMLLNQIPSG
YRSNTPGPPGPPGPPGNTGSRGEPGQPGRTGFPGNPGLPGNQGERGLPGEKGERGSPGTG
IRGQRGPSGPPGPPGESRTGPPGPSGSAGPRGPPGRQGTPGVRGPPGPPGYCDSSQCVGI
PYNGQGYTANRYPPEPEVVNIPVEPAGEFETRNPRGKRSLPQDNTDTLAS
NT seq
9333 nt
NT seq
+upstream
nt +downstream
nt
atgaagatagggctgtctctggccacggctgccatcctggcggccctgttatcctccata
gatgctcaagtggaaccgccctcaaacttgaaatttcacattctaaatgagaacacagtg
gaaatgtcgtgggtgagaccctcggcaacgatagagggctacagaatacaagtgcaagtg
ccggatggagatgaaccgaccagagaatttaccttagctgcatctgccactatgacatca
ctcactgacctgacccctgacttggactactctgtgtcaataaactcctattatggctca
gaggagagcatctccatctatggacaactgaccatccagtccagtaacagcagcggacgc
gtcaggaggccacaggcagatgcaatcaagtgttcggtcagtgcgatagccgacttggtc
ttcctggtggacggctcttggagtgtgggaagagaaaacttcaaacacatccgcagcttt
atcggctcgctggcaggggcctttgacattggcgaggacaaaacccgggtggcggtggtt
cagtacagctcagacactcgtacagagttccccctcactcgttacaccagaagaggagac
ctgctccaagctatcaactcacttccgtacaaaggaggaaataccatgacaggcgatgcc
atagagtacctggtgagaaacattttcactgaggcagctggatccaggaaagcttttcca
aaggtagccatgatcatcactgatggaaaatcccaagacccagtggaggagcatgctaga
agacttaggaacattggagtggaaatatttgtcctaggtatcaaaggagcagatgaggat
gagctaagggaaatagcctccacacctcacagcaaacacgtgtacaatgtgcccaacttt
gacatgatccaggaggtccagaaagagatcataacacaagtgtgctccggtgttgacgag
cagctgaactttctggtcagcggagaggagatggtggagccagcctctaacctgaaggtc
acagaagtttcatccaagtcaatgagggtgacatgggactcgtctctgggtgatatcact
ggctacaagctaaccctcattcccatgcttcccgggatgaaacgccaagagctgtacatt
ggggctggacagacatccgtcaacgtccgtgacctttcccccgagaccgagtatgaaatc
aacctgtacgccctcaaaggtctgactcccagcgaacccatcactgaactggagaagacg
cagcctgtcaaggtgtcaacagagtgctctctgggagtggatgtgcaggccgatgttgtc
ctgctggttgatggctcgtacagtattggattacaaaactttgcaaaagtccgtgccttc
ctagaggttctggtcaactcctttgacatcggaccaaacaaaatccagattagcttggtc
cagtacagtcgcgacacatacaccgagtttgccctcaacactcaccacgacattaacgct
gtcgtcagagctgtgcgcaccttcccctaccgcggcggctccactaacaccggcagggcc
atgacttacgtcagggagaagatcttcgtcccagctcgtggagcgagacagaacgtgccc
cgcgtcatggtcctgatcacagacggaaagtcgtcagactcttttagggatgcggccacc
aaactgaggaatattgatgtggaaatatttgctgttggcgtgaaggatgcggtgagatca
gagctggaggccatcgctaatccaccgtcagaaacccatgtgtatgaggtggaggacttt
gacgcttttcagaggatctctaaggagctgactcagtccatctgtctgaggattgaacag
gagctgctcaacatcaaaaagagaagtttgcttccaccgagcgatttgcgcttttccgag
attacctcccgaagcttccgtgctacctgggtacctcctcttgccaatgtcttgtcttac
ctgctacgtttccgaaaggcggaagatgtcaccggagactacatttccctggcgttgccc
ggcgataccaacacagctgtccttccccatctttatcccctcaccacctatgaagtcaat
gtctttgctcagtatgataaaggagacagtttccctttgaccggtgaagagacaactctc
gaagaacaaggggctgtaagaagtctacgagtgacagacgaaacaaccaacagtttcaag
gtgtcatggcaagctgcgccgggttcagtgatcagataccgcctgtcctacgtcccgctg
agcggcacaggagagatactggaggctcagacccttggcccagagaccaccatagtcctc
caggagctcttccccatcactacctaccgtgtgtctgtgtctgctgagtatgcatctggc
cttggaagcgagatgcaggtggatggaaccaccaaggaggtccgcggctctccccgtgac
ctgcgtgtcttcaatgaaacaatatctacaatgaaactgacgtggagggctgctcctggc
aatgttcttcaataccgcattgccttcaaacctgctgagggaggtgagaggaaggagatc
tctgtcaaaggagacaccacccaggctgtactgaagaacctccaaccagccactgagtat
gagctgtttgtcagcgctcgctattcttctggtttgggtgagcctctcctgggcaccgga
accaccttagaagagctcggctcacccagagacttggtgaccagcgacgtcaccgacacc
agttttgccgtgtcttggaccgcggccccgggtaacgttcgtcagtacagggtcatgtac
aagtctctgttcactacggagtctggggaagcagtaataccaggaagcagcaccaccaca
gttttgaaaggtctcaccccagagacacgctatgaggtgtctgtgtttgccgtctacggc
catggaaggggccagccgttggttggagaagaaaccacagatgtttcagctgctggcaga
gcgatcgtcgtctcagaggagacggagaagtccatgaaggtgacatggcagccggcacct
ggaaacgtcgtcaactaccgcgtcacttacaaaccacaggcaggagggcgccagctggcg
gccaaagtgcccggtggcactaccaccactgtgctgagacgccttacccatctcaccact
tatgacatcactgtggtgccagtttatcgctccggagaaggcaaagcaaggcaaggggaa
ggaactacattaacaccttacaaaggcccgaggaacctccagacttcagagcccaccaag
accagtttccgtgtaacctgggaccatgctcccggtgatgttaagggctacaaagtcact
taccacccagtcgaggatgacatcaacctggggcaacttctggttagtccctatgataac
actgtggtgctggaggaactcagagctggtaccaaatacacagtgagtgtgttcggtatg
tttgaaggaggagagagcatgccgttggctggagaggagtacaccacctactctgatgca
cctgatcctccaccttttgacacgccaaatacgatgtgtaggaccaatgctcaggctgac
attgtgcttctggtggatggctcctggagtatcggacgtctgaacttcaagactattcgt
gccttcattgcacgtatggtgggcgtctttgacatcggccctgatcgggtccaaatcggg
cttgctcagtacagcggagacccaaagaccgaatggcatttgaatgctcaccaaacccga
gagtctctcctggatgctgtgtctaacctgccctacaagggaggaaacactctgacaggt
ctggctttgaactacatcctccagaacaatttcaaagaggacgtcgggatgcgtcccagc
gctcgaaagattggcgtcttgatcactgacggaaaatcgcaggatgacgtcattgtccac
tctcaaaacttgcgcgatcagggcattgagctctatgccatcggtattaagaatgcagat
gagaacgagctgaggtccatcgcctctgagccgaatgacattcacatgtacaacgtggct
gatttctccttcctgctggacattgtggaccgggtctctgacaacctgtgtaacagtgtc
aaagggccaggaggtgctccagatgcacccactaatctggtgacatcagaggtgactcac
cagtccttcagagtcacctgggacggccctgacgaccaaccagaaaagtaccgtgtggag
tacaggactttatcgggagccccacagcaggtgatcgtggatggcagtcagaccactgtg
gttctccagaggctcaaccctctcacacagtacctggtcagcgtctactccgtggtggga
gaggagagcagtgacgctttggatggaaaagagaccacacttcccctgagtgccgtgagg
aggatggagatttacgatcagcaggtcaccaccatgagagtgagatgggaaagggccccg
ggagccacaggctacatgctgctctacagcgccatcaatgctacgcaggccaccaccgag
caggagatcagagtgggcggcgacacaaccgacgtccagctggtaaagttgctccccaac
acggcctacacgctttccctgtttgccctccatggagaatcagccagcgaaccactgacc
aagcagggagtcacattgcccatgccacctgcgggagaactgagggttcgggatattacc
cacagcaccatgacgcttgactgggatgctgctcccggtcccgttcgcaagtacctcatc
acctataagcctgagagtggagaagcaaaagaactggaagtgggaggacgtgtgaccagc
agacagttggataacctgatctctcagaccgagtacactttagctgttactccaatctat
gacgaaggtcccggacagccgatgctgggagaggctatcacagatgtggttccagcacca
aagaacctgcgattctcagaagtcactcataccagctttagagctcactgggagcatgga
gcgcctgacgtggctctgtaccgcattggctgggtgaagaagggagatacccacacccaa
tacgccattctgaacaatgatgagacgacccacctcctggagaacttggagtcggacacg
ccctacgacgtgtccgtcactgcgatctacccggatgagtcggagagcgaggacctgctg
ggcaccgagaggacattgcgtcgtcaaaatggttccccactgcctgttccaccgcccacc
aacctggttgtgtacaatgaaaccaccaccactctgaacgccatgtggactccaccgacg
ggccgtgtccagaactacaagatctcttacgtccccacatctggaggcaggactcagact
acccaggttggaggaaagaagactacagtcctgcttcctaagctgacgcctgacaccgag
tacgccatcagcgtggtggcagtctatgccaaaggacccagcggaccgctggagggcatc
ggaaagaccaagcctctgggtggtgttaggaacctgcgggtaactgaccccaccaccagc
accctgaacgtccagtgggagcctgctgaggggagcgtccgtcagtacaggatcttctac
gtgcctgcagctggaggagtggaagacatggtgcaggtgtcaggcagtacctacagtacc
gtcctgaggaacctggattctgatactgtgtacactgtgtctgtggttcccgtatatgct
gctggagaaggactgcgcatgtctgagaacggcaaaacattggagcgcagccccgtcaga
aacatccaggtttacaaccccaccaccaacactttgaacgttcgctgggaagctgccaca
ggtccagtccagcagtaccgggtggtctactctcctttgaacggtgccaggccttcagaa
tcaattctggtaccagggacaaccaccacggccctgttgcagcagctgcttccaaacact
gattacaatgtgggagttgttgctctgtacagcgatggcgaaggacctgctatcagtgat
gcaggaaagacattgccccgaagtgccccgaggaacttgcgcgtatacgaccccaccacc
actaccctctctgtcagctgggaccatgcagatggtcctgtcatgcagtaccgcatcacc
tacgcccagattacaggagacccgattgaggaatatactacagtgccaggaaacagaaac
aacgtgatcctgcagaacctggacccggacacgccgtacaacatcaaagtgaccgccgtc
tatgctgatggaccaggaggagaggtggatggtgacggacgcacagtgggaatgctcggc
cccaggaatctccgtgtttctgatgagtggtacacccgcttcagggtgtcctgggacccc
gccccctccagggttaatggatacaagattatctaccaacctgagggctcggatcagtcc
atggaggtgtctgttggagacgtaacctcccaccagctccataacctgaaacctggaacc
acctacgacctgaaggtgttggcacagtacaacacgggtgacagtgcacctttggtcggt
caaggcaccaccttgtatctgaatgtgacggacttgaacacctacaacgttggctacgac
tccttctgcctccgatgggcccctcacagagcagccacctcctacagactcaaagtcaat
ccttttgatacctccaggagcggggctcaggagatcaccgtcagaggctcagagaacagt
tactgctttgacggcttaaccccggacactctttacaacgccaccgtgtacacgcaaacg
cccaacctcgagggacctggagtcagtgtcaaagagaggacgttggttaaacccacccca
gtgccaacagaggctcccactcctcctcctccagcaacagtcccacctgcgttagatgtg
tgcaaaggtgccaaggccgacctggtcttcctgatcgatggttcctggagtattggagac
gacagcttcaataaagtcctccagtttgttaccagcatgactgcagccttcgatgtcatc
agccctaaaggcatgcaggtttcatttgtgcagtacagcgatgacgccaagaccgagttc
aaactgaacacctaccacgacaaaggcatcgtgatctcagctctgcagggcgtccgctac
agaggaggcaacaccaagacaggcattgctttgaagcacgtctatgagaaggtgttcatc
tcagacagcggcatgaggaggaacgtcccgaaggtgctggtggtcgtcacagacggacgc
tcccaggatgaggtcaagaagagtgcagagaagctgcagcattctggctacagcgtgttt
gtggtcggagtggccgacgtggatatgaccgagctgagaaacatcggcagcaagcccagc
gagagacacgtgtttgtggtagacgactacgacgcttttgccaaaatccaggacaacctg
atcaccttcatttgtgaaacagccacttccacttgccctctgatctacatcaatggattc
accacgcctggcttcaggatgctcgaggccttcaatatcacagacaggacattcgctgcc
atgaacggtgtgtccatggagccgggctcctttaacagctacatcgcctacaggctgcac
aaagattccttcctgaaccagcccaccaaggagatccatccggatggtcttcccccttct
tacaccatcatcctgctcttccgcctcttgcccgacacaccctctgaaccttttgatatc
tggcagattgccgacaaaaacaacaaccctgaagtcggggtcaccgtcaacccttccagc
aaaacagtcacgttctacaacaaggacacccgaggagagatccagagagccacgtttaac
gagcagcaagtgaggcaggttttccacggcagcttccacaagctccacatcaccgtctct
ccagagaaagtcaagctcaacattgactgccaagaggtggcagagaagcccatcaaagag
gccaacaacatcacactggatggctatgaagtgcttggcaagatggtcaagtctggaggt
ggaaggaggcagtctgctacattccagctccagatgttcgatatcgtctgcagtttgagc
tggatcagccgagacagatgctgcgacctgcccgcaacaagagatgaggccaagtgtcca
tcccttcctcactcgtgcacgtgcacgcaggacagcatcggcccccagggacctcctgga
ccttcgggaagcccgggcaccaaaggacctcgaggagacagaggagatcctggcaagcct
ggttcgatgggtccacgtggtgagcaaggacttccaggtccgatgggaccaccaggtcca
caaggccctaacggactctctctgcccggagaacctggtcgcccaggaccgaagggagat
cccggggacccaggcctgcccggtctgcaaggtcctcctggacagcgcggtcctctgggc
cctgttggaccgagcggagcgcgggggccaccaggaaaggagggaccatctggacccaga
ggcccatcaggacccatgggaaatcctggaaatccgggtgttccaggaataacaggaaaa
ccaggaaaaccaggagatccaggaagtccaggacctgttggccttaaaggagagaaagga
gagaggggagattttgcatcccagaacatgatgcgctccattgcccgacaagtttgtgaa
cagcttgtgaacagtcagatgagcagagtcgacatgctgctgaaccagattccttccgga
tatcgtagcaacactcctggaccacccggtcctccaggccctcctggcaacacgggatcc
cgcggagagcccggacagcctggccgaactggtttccctggaaaccctggtttacctgga
aatcaaggagaaagaggtttgccaggagagaaaggagagcgagggtctccaggaaccggt
atcagaggacaaagaggcccaagtggaccaccagggccacccggagagtcacgaaccgga
cccccggggccttctggctccgctgggcctcgtggccctccaggtcgtcagggcactcca
ggagtgaggggaccaccgggaccacccgggtactgcgactcctctcagtgcgttggcatt
ccttacaacggacaaggttacacagccaaccggtatccacctgaacccgaagtagtgaat
atacctgtggagccagctggagagtttgagacacgaaaccccagaggaaagcgatcgcta
ccacaggacaatacagacacactagcatcatag
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integrated database retrieval system
