Oreochromis niloticus (Nile tilapia): 100704592
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Entry
100704592 CDS
T06104
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100704592 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
onl03400
]
100704592 (lig4)
Enzymes [BR:
onl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100704592 (lig4)
DNA repair and recombination proteins [BR:
onl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
100704592 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
DNA_ligase_A_C
BRCT
BRCT_2
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
100704592
NCBI-ProteinID:
XP_003440949
Ensembl:
ENSONIG00000011969
UniProt:
I3K1S4
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All DBs
Position
LG23:6135066..6143785
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AA seq
910 aa
AA seq
DB search
MDSTSKTDASSQLSVASQVPFLHLCTTLEKIQKSKLRPEKSKILGYFIEKWREFHSALHK
DNPKTTDSFYPAMRLIVPPFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRAP
TTSQGEAGDFAGMAYFVLKKRCTSQGNLSIKEVNDFLDSVATSNATKQKDLVKKSLLHLI
TQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAAELYNVNTDLNKVCQQLHNPAVSL
SEVSIGLFSAFKPMLAAVANIRNVEKQMGNSTFYIETKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPYIHHVFKSNVVNCILDGEMMAYNPAADTFMQKGSKFDIKRLM
DDSELQTCFCVFDVLLINDQKLGKETLKKRHELLQTVFTPVKGRLHLVPKAEARTMQEVV
NALNDAIDSREEGIMVKDPLSIYKPDKRGESWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLTKHWKVYRKNNPP
ASILCGTEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRSKASGKLASRHLHIDNGEPQKKKRKLPVKPKKVIGIIDHFKPQDLSGVTKET
DMFEDVEFCILNGTEDHPKSELEKGVARCGGFVVQNPGRDTYCVVAGVENMRVKNLISSN
QHDIVWATWLLECLDRKEVVPWQPRHMIHMSPSTREHFAKEYDNYGDSYFVDTDEQQLRE
VFNRISSADVSKEVNVTQVEERYSWDDLPTSMFRPFTAYMDRFTDIGDPKSAIPATCLDT
RSLEFRYHGGKVVEKLEEGVSHVIIAEETRLLDLRTLRRCFRRKFKIVKETWVTDSIKAG
HVMNDTEYLA
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggacagcacttccaaaactgatgcttccagtcagttatctgttgcttctcaggttcct
ttccttcacttgtgtaccacactagaaaaaattcaaaagtccaaactccgtccagagaaa
tccaagatccttgggtacttcattgagaaatggcgtgaatttcattctgccctccacaaa
gacaaccccaaaactacagactctttctatcctgccatgcgcctcatagtcccgcctttt
gaacgagagcgaatggcatatggcatcaaagagagcatgctggctaaactctacattgat
gtattaggcctcccaaaaaatggccctgaggctaataagctgttgaattaccgtgctccg
accacatcccaaggagaagctggagactttgctggcatggcgtattttgtgctgaagaaa
cgatgcaccagccaaggaaatctcagtattaaagaggtcaacgacttcctggattcagta
gccaccagcaacgccaccaagcagaaagatcttgtcaaaaagagtctgctgcacctcatc
acccagagctcagctcttgagcaaaagtggctcattagaatgattctgaaggacatgaag
ctcgggatcagcaaagaaaccgttctccaagttttccacccagatgctgctgagctctac
aacgtcaacacagacttgaacaaggtgtgccagcagttacacaatccagccgtgtcctta
agtgaagtctctattggacttttttctgctttcaaacctatgctggcagctgtggctaac
atccgcaacgtggagaaacagatgggaaacagcactttttacattgagacaaagctggat
ggagagcgcattcagctgcacaaagatggggatgtgtacaagtacttcagccgaaatgct
tttgagtacacgcagcagtttggaggatccccgttggaaggatcactgacgccttatatc
caccatgtttttaaaagcaatgtggtgaactgcattctcgatggtgagatgatggcatac
aacccggcagcagacaccttcatgcagaaagggagcaaatttgacatcaagaggctgatg
gatgactctgagttgcagacatgcttctgtgtgtttgacgtgctgttaataaatgatcag
aagctaggcaaagaaactctcaagaagcgacatgagcttcttcagacagttttcactcca
gtcaagggaaggctgcatctggtgccaaaggctgaagccagaaccatgcaggaggtggtg
aatgctctcaatgatgccattgacagcagagaagaggggatcatggtgaaggatccttta
tccatctacaaacctgacaagcgaggtgaaagctggctgaagataaaaccagaatatgtg
gatggcttgatggatgagcttgacctgctgattgttggtggctactggggaaaagggaga
aggggtggcatgatgtcccatttcttatgtgctgtggccgaagctccaaagcctggcgag
aaaccttcagttttccataccctttgccgcattggctccggctacaccatgaaagaattg
tatgaccttggtttaaagctcaccaaacactggaaggtctaccggaaaaacaacccacca
gcatccatcctgtgtggaacagagaaaccggaagtctacattgaaccctgcaactctgtt
atcatccaggttaaggcggctgagatagtcgggagtgacatgtataaaaccaactgtact
ctgcgcttccccaggattgagaagattcgagatgacaaagaatggcaccagtgcatgaca
ctggcagagctggatcagttccgcagcaaggcgtctgggaaactcgcctctcggcacctt
cacattgacaacggtgaaccgcaaaagaaaaagcgcaagctgccagtcaaacccaagaaa
gtgatcggcatcattgaccactttaagccccaggacctttccggggtgaccaaggaaaca
gatatgtttgaggacgtggagttctgcatcctgaatggcaccgaagatcatcccaagtct
gaactggaaaagggtgtggccaggtgtggaggttttgtggttcagaaccctggacgggac
acctactgcgtggttgccggtgtggagaacatgcgcgtgaagaacctgatttcatccaac
cagcatgacatagtttgggccacctggctgctggagtgtctggaccggaaggaggtggtt
ccatggcaaccccgccacatgatccacatgtcgccttccaccagggagcactttgccaag
gagtacgacaactatggcgacagctactttgttgacacagacgagcagcagctgcgggag
gtgttcaacaggatcagcagcgcagacgtgtcaaaggaggtgaatgtcacgcaggtggag
gaacgctacagctgggatgaccttccaaccagcatgttcagaccattcacagcatatatg
gacagatttactgacataggagaccctaaaagtgccatacctgccacctgcctggacacc
aggtcattggagtttcgctaccatggaggaaaagtggtggaaaagctggaggaaggcgtt
tcacatgttattattgccgaggaaacaagacttctggatttgaggactctgaggcgctgc
tttaggaggaagtttaagatagtaaaagagacatgggtgactgattcaatcaaagcaggg
catgtgatgaatgacactgaatatctggcttga
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