Oreochromis niloticus (Nile tilapia): 100708029
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Entry
100708029 CDS
T06104
Symbol
prkn
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
onl
Oreochromis niloticus (Nile tilapia)
Pathway
onl04120
Ubiquitin mediated proteolysis
onl04137
Mitophagy - animal
onl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
onl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
100708029 (prkn)
04120 Ubiquitin mediated proteolysis
100708029 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
100708029 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
onl04131
]
100708029 (prkn)
04121 Ubiquitin system [BR:
onl04121
]
100708029 (prkn)
03029 Mitochondrial biogenesis [BR:
onl03029
]
100708029 (prkn)
Enzymes [BR:
onl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
100708029 (prkn)
Membrane trafficking [BR:
onl04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
100708029 (prkn)
Aggrephagy
Other aggrephagy associated proteins
100708029 (prkn)
Xenophagy
Other xenophagy associated proteins
100708029 (prkn)
Ubiquitin system [BR:
onl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
100708029 (prkn)
Mitochondrial biogenesis [BR:
onl03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
100708029 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
ubiquitin
IBR
Rad60-SLD
Dsc3_N
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
100708029
NCBI-ProteinID:
XP_005462306
Ensembl:
ENSONIG00000007137
LinkDB
All DBs
Position
LG13:2631875..2639733
Genome browser
AA seq
449 aa
AA seq
DB search
MIVFVRFNLGPGVPVELQEEASVAQLKEVVGSQQGVRPERLRVLFAGRELQSTATLQGSD
LPEQSTVHVVLPPSGASSFQQLMQEHRAEGSLTRLDLSSSRLPASSEGGGGGAEGESLEE
VQAVAHSSVRACSTFFVFCKSCCSIEPGKLRARCQSCKQTTLTLSRGPSCWDDVLLPGRI
HGICQSEGCQGNEAEFYMKCASHPTSDDDFSVALDLIMTNTRGVPCIACTDVMGVVLVFQ
CLERHVICLDCFQRYCQTRLNDRQFVYHPVIGYSLPCAVGCDDSLIKEVHHFRILGDEQY
GRYLQYGAEECLLITGGMMCPSPGCGAGLVPPDGSRKVECDRRLGCGFVFCRLCRXEYHE
GPCQAVTAPPTGEAAQGFVVGEEASLRGRWERASLLVIAELTRRCPTCSVPVERNGGCMH
MHCPLCKAEWCWLCGVPWNRECMGNHWFG
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtgtttgtgcgctttaacctgggccctggcgtcccggtggagctgcaggaggag
gcgagcgtggctcagctgaaggaggtggtgggaagtcagcagggggtgcggccggagcgc
ctcagggtgctgtttgcgggccgggagctgcagagcaccgccacactgcagggcagcgac
ctcccggagcagagcaccgtccacgttgtcctccctccttcaggcgcctcctcctttcag
cagctcatgcaggagcaccgagctgagggctctttgaccaggctggacctcagctcctcg
cgactccctgccagcagtgagggaggagggggcggagcagagggggagagcctggaggag
gtgcaggctgtagctcacagcagtgtgcgtgcctgtagtaccttctttgtgttctgtaag
agctgctgctccatcgagccaggaaaactgcgagcgcgctgccaatcctgcaaacagacg
acgctgactctcagcaggggtccgtcctgctgggacgacgtgctcctccccggtcgcatc
catggcatctgtcaatcagagggttgtcagggcaacgaagcggagttttacatgaagtgt
gcgtctcacccgacgtcagatgatgacttttctgtggccctcgacctcatcatgaccaac
accagaggcgtgccctgcatcgcctgcaccgatgtcatgggtgtggtcctggtcttccag
tgcttggagcgtcatgtgatctgtctcgactgtttccagcgttattgccagacccgcctg
aatgaccggcagtttgtgtaccatcctgtgattggctactcgctgccgtgtgcagtcggc
tgcgacgactctctgattaaagaagttcatcatttcaggatcctgggagacgagcagtat
gggcgctacctgcagtacggcgccgaggagtgtctgctcatcactggaggaatgatgtgt
ccatcacctggctgtggggcggggcttgtcccacctgatggcagcaggaaggtggagtgt
gaccgccggcttggctgcggcttcgtcttctgcagactctgcaggngggagtaccatgag
ggtccgtgtcaggcagtgacagccccgcccacaggggaagcagcacagggcttcgtggtc
ggggaggaggcgtcgctcagggggagatgggagcgagcgtctctgctcgtcatcgccgag
ttgacccggcgctgcccaacgtgttcagttcccgtggagagaaacggtggctgtatgcac
atgcactgcccgctgtgcaaggccgagtggtgctggctctgtggagtcccctggaacaga
gagtgtatgggaaaccactggttcggttaa
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