Oenococcus oeni: OEOE_0183
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Entry
OEOE_0183 CDS
T00408
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ooe
Oenococcus oeni
Pathway
ooe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ooe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OEOE_0183
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ooe03400
]
OEOE_0183
Enzymes [BR:
ooe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OEOE_0183
DNA repair and recombination proteins [BR:
ooe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OEOE_0183
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
MFD_D3
DUF5636
RecG_dom3_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABJ56175
UniProt:
Q04H97
LinkDB
All DBs
Position
171542..175108
Genome browser
AA seq
1188 aa
AA seq
DB search
MMHSLTDFISRLPLIEKIVSNQADQTSTQLISGVNDTPKAALAAGVFVRLKAEKNSKKIL
LLTDTQFRADQLTSDLEALLEDENVFEMQSEESLATETAVASRDADLSRVLALRALLSKE
NSIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKKLIEMGYNKQTLVANPGEF
SVRGEIVDIYPINFDEPIRLDFFDDELESMRTFDADSQKSLNKIKQASVSPVSDFLLPRA
EFSDGLKQLEQAFVDYLNKLKGAEKKKLTEFFNPLLEAAKHFSYGHELLPFSEFFLKHSI
FEYLQSEDLILIDDFARINDQTNIQEKKNAEWITDRLREFKLLPDLKVKIDGINLIKKSQ
QKLSKKIQKFVNPKIYLSNLTRGLAGITFTSRTQLITRQMQQYFGQMPALKLDLESYRKR
DFTVLLQASNRERLLSLQRTLHDFGMNFAITDDILTGTAQLQIGSLSHGFELPEEKIVVM
TETELFAKVKKRVPRHQTFSNAEKITSYTELKTGDYVVHVNHGIGRYEGLTTLEANGGKQ
DYITIAYAQKAKIFVPVTHLNLVQKYIGAADGRPKVNSLNSTDWAKTKRRVTAKVEDIAD
ELIALYSKREGEVGYAFSVDDQRQQEFDDGFAYPETVDQLRSIKEIKSDMENKKPMDRLL
VGDVGFGKTEVAFRAAFKAIEDHKQVAFLTPTTILSQQHYQTAIERFSDFPEIKIAMLSR
FNTAGQNKEVIKKLKAHQLDMVIGTHRLLSKDVAFDDLGLLIIDEEQRFGVKHKEKIKQL
RANVDVLTLTATPIPRTLNMALVGARDLSVLETPPANRFPIQTYVLEENWPVIADAIEKE
LSRGGQTFFLHNRVQDIERTVGEIQRIVPDANVGYIHGRMNETQLEDVLMDFLNGIYDVL
VTTTIIETGVDIPNANTLIVENSERFGLSQLYQLRGRIGRSNRLAYAYFTYPGDRQPTED
AQKRLEAIRDFTELGSGFKLAMRDLSIRGAGDLLGKQQHGFIDSVGYELYQQMLQEAVSQ
KQGKDKKVMQTNAEIVLNIEALLPDSYVNDSSQKVELYQRIRKSRTDEQFNEVRQDLIDR
FGPIPEVVDNLFALAHLKNATDAANVINLHGDDSQIRIIFSRRVSQILAGETIFKTLKGL
PYKVRVKAVDDQKLQLTVILNEDEKLVYIDKITKYLELVYKELKNALG
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
atgatgcactcattaacagattttattagtcgtttgcctttaattgagaagatcgtttcc
aaccaggcagaccaaacttcaacacaattgattagcggagttaacgatacccctaaggct
gctttagccgctggggtttttgtgcgtttaaaagcagaaaaaaattcgaaaaaaattctt
cttttgactgatacccaatttcgggcggatcagttaacaagtgatttggaagccctgctt
gaagacgaaaatgtttttgaaatgcagtccgaggaatcattggcaacggaaacggctgtc
gcatcgcgcgatgcagatttaagccgtgttttagccttgcgagctttattatccaaggaa
aattcaattgtggttgtcccgctctctggtctatcacgtcgttatccagaccctgaattc
tttcagcaggccgttttggactttaagattgcaaattcctacccacaagagcaactggca
aaaaaactgattgaaatgggttataacaaacagaccttggtggccaatcccggcgaattt
tcggttcggggtgaaattgtcgatatttatccaattaatttcgatgaaccgattcgactt
gatttctttgatgatgaattggaatcgatgcgaacttttgatgctgattcgcaaaaatca
ttgaacaagatcaaacaggcttctgtttcgccggtttctgattttcttttgccgcgagcc
gagttcagtgatggcctcaagcagcttgagcaggcttttgtcgattatctaaataagttg
aagggtgccgaaaagaaaaaactgacggagttttttaatcctttactggaagcagccaag
catttttcttatggtcatgaactcctgccattttctgagttttttttgaaacattctata
tttgaatatctgcagtctgaagatttgattttgattgatgattttgctcgaatcaatgat
caaacaaatattcaagagaaaaaaaacgccgaatggattaccgatcgtttgcgtgaattt
aagctacttcctgatctaaaagtaaaaatcgacggaatcaatttaattaaaaaatcccaa
caaaaactttcaaaaaaaatccagaaatttgtcaatccaaaaatatatctcagcaattta
acacgtggcttggcaggaattacattcaccagccgaactcaattgattactcgacagatg
caacaatattttggccaaatgccggctttgaaactcgatttggagtcctatcgaaaacgc
gatttcacggttttgctccaagctagcaatcgcgaacgtttattatccttacagagaact
ttgcatgatttcggaatgaattttgcaatcactgacgatattcttaccggaactgcccaa
ttgcagattggcagtttgtctcacggttttgaactcccggaagagaaaattgttgtcatg
accgagacggaattattcgccaaagtaaaaaaacgggtgcctcgtcatcaaactttttcc
aatgccgaaaaaatcaccagttacacagaattaaaaacaggtgattatgttgttcacgta
aatcacgggattggccgttacgaggggctaacaacgcttgaagctaatggcggcaaacag
gattacattaccatcgcctatgctcaaaaagcgaaaatttttgttccggtgacacatttg
aatttggtgcaaaaatacattggtgcggctgacggcaggccgaaggtcaattctctaaac
tcaactgattgggctaaaacaaaacgtcgagtgaccgctaaagtagaggatattgctgat
gaattaatcgctttatattcgaagcgcgagggagaagttggttacgcattttcagtcgat
gaccaaagacagcaggagtttgatgacggctttgcttacccggaaacagtcgatcagctt
cgttcgattaaggaaataaaatcagatatggaaaataagaaaccaatggatcgccttttg
gtcggcgatgttggtttcggtaaaacggaagtcgcttttcgagcagcctttaaggcaatt
gaagaccacaaacaagtcgcgtttttaacaccgacaacaattttgtcccaacagcactat
caaaccgcaatcgaaagattttcggatttcccggaaattaagattgctatgttatcgcgt
tttaatactgctggacagaataaagaggttattaagaaattaaaagcccatcaacttgat
atggttattggcacacaccgtttattgtccaaggacgttgcttttgacgatcttggcctg
cttattattgacgaggaacagcgttttggcgttaagcataaagagaaaatcaaacagtta
agagctaatgtcgacgttttgactttaaccgccacgccgattccgagaaccttgaatatg
gcattggttggagcccgcgatttatcggttttggaaacgcctcctgccaatcgttttccg
attcagacttacgttttggaggaaaattggccggttattgccgatgcaatcgaaaaggaa
ttgtctcgtggtggccaaactttctttttgcataatcgggttcaggatatcgagcggact
gttggtgaaattcaaagaattgttcccgacgccaatgtgggctatattcacgggcggatg
aacgaaactcaattagaagatgtcctaatggattttttgaatggtatttacgatgttttg
gttacaacgacaattattgaaacgggggtcgatattcccaatgccaatactttgattgtt
gaaaattcggaacgtttcggcctgtcgcaactttaccagttacgtggccgaattggtcgt
tctaatcgattagcttatgcatactttacttatccaggcgatcgtcaaccaactgaggat
gctcaaaaacgtctggaagcgattcgcgatttcacagaactcggttccggttttaaatta
gcgatgcgtgatttatcaattcgtggtgccggtgaccttctagggaaacaacagcacggt
ttcattgattcggttggttacgagctttatcaacagatgcttcaagaggcggtttctcaa
aaacagggaaaagacaaaaaagttatgcagacaaatgcagaaattgttcttaatatcgag
gcccttttgccggacagttatgttaatgattcttctcaaaaagtcgagctttaccagcga
atcagaaaatcgcggactgacgaacaattcaacgaggttcgtcaggatttgattgaccgt
tttggtccgattcctgaggtggtagataatcttttcgctttggctcacctgaaaaacgca
accgatgcagccaacgtcattaatcttcatggtgatgattcccaaatcagaattatcttt
agtagacgggtcagccaaattctggctggggaaacaatcttcaaaaccttaaagggactt
ccatacaaggttcgtgtcaaagccgttgacgatcaaaaactgcaattgacagttatttta
aacgaggatgaaaaactcgtctatattgataaaataaccaaatatcttgaattggtttat
aaggagctaaaaaatgcgcttggataa
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