Orcinus orca (killer whale): 101278113
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Entry
101278113 CDS
T05247
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
oor
Orcinus orca (killer whale)
Pathway
oor04151
PI3K-Akt signaling pathway
oor04510
Focal adhesion
oor04512
ECM-receptor interaction
oor04820
Cytoskeleton in muscle cells
oor04926
Relaxin signaling pathway
oor04933
AGE-RAGE signaling pathway in diabetic complications
oor04974
Protein digestion and absorption
oor05146
Amoebiasis
oor05165
Human papillomavirus infection
oor05200
Pathways in cancer
oor05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
101278113 (COL4A4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101278113 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101278113 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101278113 (COL4A4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
101278113 (COL4A4)
09154 Digestive system
04974 Protein digestion and absorption
101278113 (COL4A4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
101278113 (COL4A4)
09162 Cancer: specific types
05222 Small cell lung cancer
101278113 (COL4A4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
101278113 (COL4A4)
09174 Infectious disease: parasitic
05146 Amoebiasis
101278113 (COL4A4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
101278113 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
oor04147
]
101278113 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
oor00536
]
101278113 (COL4A4)
Exosome [BR:
oor04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101278113 (COL4A4)
Glycosaminoglycan binding proteins [BR:
oor00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101278113 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101278113
NCBI-ProteinID:
XP_049568152
LinkDB
All DBs
Position
7:complement(109134511..109267817)
Genome browser
AA seq
1700 aa
AA seq
DB search
MVSVKTFVQTFIMDHRNSVMYFTLPHYKAFEGRLLVLILFSVQHAYGGGKKFIGPCGGRD
CSLCQCFPEKGSRGQPGPPGPQGPIGPLGPPGPIGIPGEKGMRGDTGLPGAAGDKGDKGP
TGVPGFPGLDGIPGHPGPPGSRGKSGIDGYNGSRGAPGFPGERGAPGPQGSPGLLGKKGE
KGNSVFILGVIKGIQGDRGDPGPPGLPGSRGVRGPAGPVGYPGEPGLAGPPGPPGSPGLK
GNPGVGVKGQMGDPGEVGQQGSPGPTLLVQPPDSGLYKGAKGIKGTPGIIGPPGPPGPKG
EPGIGTKGEKGIPGFPGPRGDPGFYGSPGFPGLKGEPGVFGDPGPFGFLGPKGDPGDRGH
PGPPGILATPALPLKGPPGDPGHPGRYGETGAVGPPGPPGPPGRPGEVCAGMMGPPGPRG
FPGHPGFPGAAGIPGRADSAPGKPGDQGPPGLPGVPGLPGPPGSDVVYCSAGPPGPQGIK
GKVGPPGRRGSKGEKGNTGLCACQPGPSGPPGPPGLPGRQGSKGDLGLPGRLGEKGYPGL
PGARGSPGPPGKPGTSGPPGSKGEKGDLVVSRVKGHKGERGPDGPPGFPGQQGQHGRDGY
AGEKGDPGPLGDHEDAAPGDKGPPGPPGPPGRAGPRGPPGLGFPGPPGERGQPGAPGCPG
KRGPDGLKGQKGDTVPCNVTYPGRPGPPGFDGPPGPKGFPGRRGAPGLRCLDGEKGQRGK
PGISEIPGPPGFHGDMGDPGFGGEKGSSPVGPPGSPGSPGVNGQKGPPGDSAIGYPGPPG
KRGLLGVPGSKGLRGDPGRPGAAGPAGMPGFPGLKGPKGREGSAGFPGIPGPPGHSCERG
APGRPGPPGLPGAPGSPGAPGWKGQQGDMGPPGPAGMKGLPGVPGRPGADGPPGPPGVPG
PSGDDALPGLPGPKGPQGLPGFLGFPGERGKPGPDGHPGRKGEHGEQGWPGSLGDRGVKG
DKGARGPPGYEGEMDIISKKGETGEPGPPGDGGFPGEEGDKGHPGIQGKKGEPGSCGPPG
FHRGEPGRKGQPGLPGPPGPPGSPGLRGLIGFPGFPGDQGEPGSPGPPGLSGIDGTRGPK
GYKGEPASQFGLPGPKGEPGSPGYPGHLGAPGEQGLPGVQGPGGPPGRPGPPGSSGPAGC
PGNPGLPGLQGHPGEMGDPGPRGLVGDPGAPGLPGIKGPSGSPGLNGLHGLKGQKGSKGA
SGSHKMGPPGPVGMPGPKGQTGDPGSPGISPPGLFGDKGPPGPPGRPGPPGPAGAPGRAL
KGDIPDPGLPGDQGPPGPSGPRGIPGPPGPPGRVELLKGEPGDCGLPGPPGPPGPPGPPG
RKGFPGCDGKDGQKGPMGFPGLQGPPGTPGPPGEKGLPGPPGRQGPLGPPGSRGEPGPPA
DVDACPRIPGLPGVPGPRGPEGTMGLPGMRGPPGPGCKGEPGLDGRRGEDGLPGSPGPPG
HKGDMGEAGCPGVPGPPGPVGDPGPEGFGPVYPSGFLLVLHSQTDGEPTCPAGMPRLWTG
YSLLYLEGQERAHNQDLGLAGSCLPMFSTLPFAHCNIHQVCQYARRNDRSYWLASAAPLP
MTPLSEEEIRPYISRCAVCEAPAQAVAVHSQDQSVPPCPRAWRSLWIGYSFLMHTGAGDQ
GGGQALMSPGSCLEDFRAAPFLECQGRQGTCHFFANEYSFWLTTVRPDLQFSSAPSPDTL
KESQAQRQKISRCQVCVKHS
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atggtctctgtgaagacctttgtccagacctttattatggatcacagaaacagtgtcatg
tattttactcttccacactacaaggcctttgagggcaggttgctcgtacttattctcttc
tctgtacaacatgcgtacgggggtggaaagaagtttattggtccctgcgggggaagagat
tgctctctttgccagtgctttcctgaaaaggggtctcggggtcaaccaggaccaccaggg
ccacagggtcctattggacccctggggccaccaggacccattggaattccaggagagaaa
gggatgagaggtgacactggccttcctggagcagcaggtgacaagggtgataagggtcca
actggtgttcctggattcccaggtttggatgggatacctgggcacccagggcctcctgga
tccagaggcaaatctggcatagatggctacaacggctcaagaggtgctccaggctttcca
ggagaaagaggagctcctggcccacaaggctccccaggccttcttgggaaaaaaggagaa
aaaggaaattcagtgttcattttaggtgtcattaaaggtattcagggtgacagaggggac
ccaggacctcccggcttaccaggctcaaggggagtgagaggaccagcaggcccagtggga
tatccaggagagccggggttggcaggacctccaggccctcctgggagcccaggtttgaag
ggtaatcctggcgtgggagtaaaggggcaaatgggagacccgggtgaggttggccagcag
ggttctccaggacccacccttctggtgcagccacctgattctggtctctataaaggagca
aagggtattaaaggaacgcctggaatcattggacctcccggaccaccaggacccaagggg
gagcccggtattgggacaaaaggagagaaaggtattcctgggtttccaggacctcggggg
gaccctggcttctatggctctccaggttttccaggattaaagggggaaccaggagtgttt
ggagatcctgggccgtttggatttcttggtccaaagggagatcctggagaccgcgggcac
ccaggaccaccagggattttggcaactccagctcttccactcaaagggcctccaggggat
ccagggcaccctggccgctatggagaaacgggggctgttggaccacctggtccccctggt
ccccctggtagaccaggcgaagtctgtgcaggcatgatgggaccccctgggccacgaggg
tttcctggtcatccaggatttccaggggcagctggtattcctgggagagctgattctgct
ccagggaaaccaggcgaccagggaccacctgggttgcctggagtgccagggttgccggga
cctccaggatcagatgttgtatattgtagtgctgggcctcctgggccacaaggaataaaa
ggcaaagtgggtccaccaggaagaagaggctcaaaaggagaaaaaggcaacacagggctc
tgtgcctgccagcctggtccctcaggcccacccggccctccaggacttcctgggaggcaa
gggagtaaaggagacttgggactccctgggcgacttggagaaaaaggttacccaggcctt
cctggtgccagaggatctccagggccaccaggaaaacctggtacctcaggaccacctggc
agcaaaggagaaaaaggtgacctggttgtatcaagagtgaaagggcataaaggagaaaga
ggtcctgatgggcccccaggatttccggggcagcagggacaacacggtcgagatggatat
gctggagaaaaaggggacccaggaccgctgggagatcatgaagatgcagccccaggtgat
aaagggcctcctggaccaccaggccccccgggcagagcaggacctagggggcctccggga
ctgggatttcctggtccaccaggagagagagggcaaccaggagctccaggctgcccaggc
aagaggggccctgatggcttgaagggtcagaaaggtgatacagttccttgtaacgtaacc
taccctgggaggccaggcccgccaggttttgatggacctccaggtccaaagggatttcca
ggtcgtcggggagctcctgggttgaggtgtctggatggggaaaagggtcaacgtggcaaa
ccaggaatctcagaaatacctggtccacctggttttcatggtgatatgggagatccaggt
tttggaggtgaaaaggggtcctcccctgtcgggcccccaggctctccaggttcacctgga
gtgaatggtcagaagggacctccgggagactctgctattggctacccaggacccccagga
aagaggggtcttttaggagtaccagggtcaaaaggactcagaggtgatcctggacgaccg
ggggctgcagggccagctggcatgcccggattcccgggtctcaaaggtcccaaagggaga
gagggaagtgctgggtttccagggatcccaggtccacccggccattcctgtgaaagaggt
gctccagggagaccagggccaccagggctccctggagctccaggaagtccaggtgcccca
ggttggaaaggacaacaaggggacatggggcctcctggacccgctggaatgaagggcctc
cccggagtcccaggacggccaggggcagatggacccccagggcccccgggagtcccaggc
cccagtggggatgatgcgctacctggtcttccaggcccaaagggaccccaggggctaccc
ggcttcctgggttttccgggagagagaggaaaacctggcccggacggacaccctggcaga
aagggagaacacggagaacagggttggcccggctccctgggagaccgaggagtgaaaggt
gacaaaggagcaagaggacccccaggatatgaaggagaaatggatattatttcaaaaaag
ggggaaaccggggaacctggacctcctggagatggtggattcccaggagaagaaggtgat
aaaggccatcctgggatacaagggaagaaaggagagccaggaagctgtggaccacctgga
tttcacagaggggagcccgggaggaaagggcagccaggtcttcctggacccccaggccct
ccaggctcacctgggctgagagggctcattggctttccgggatttccaggtgaccagggt
gagccaggttctccagggccccctggactttcaggaatcgatggtacaagaggacctaaa
ggatacaaaggggaacctgcaagtcagtttggcctacctggtccaaagggtgagccaggt
agccctggatatccaggacatttgggagcacctggagagcagggcttgcccggtgttcaa
ggacctggaggaccacctggaaggccaggaccgcctggctcctctggaccagcggggtgt
ccaggtaatccagggctgcctgggctgcagggacatccaggagaaatgggggatcctggg
ccaagaggcctcgtgggggatccaggggcaccaggtcttccgggaataaaaggtccctcc
gggtcgcccggcctgaacggcttgcacggtttaaagggtcagaagggcagcaaaggcgct
tcaggttcccataaaatgggcccacctggtccagtgggaatgcccgggccaaaaggccag
acaggagaccccgggagcccaggaatttctcctccaggactcttcggagacaaaggtccc
ccaggtcccccagggagacctggaccgcctggtcctgcaggtgccccaggaagagctctt
aagggtgacattccggacccgggtctgcctggagatcagggacctcctggccccagtggt
ccaagaggaatacccgggcctccagggccccctgggagggttgaacttctgaaaggtgaa
ccaggtgactgtggtctgccggggcctccaggtcccccaggcccaccaggccctccagga
cgcaaaggcttcccaggatgtgatggaaaagatggccagaaaggaccaatgggattcccg
gggctgcaggggccacctggaactcctgggccacctggagagaagggtttacctggacct
ccaggcagacaggggcccttgggtcctccaggttccagaggtgaacctgggccccctgca
gacgtggatgcttgcccccgaatcccggggcttcctggggtaccaggcccaagaggacca
gaaggaaccatggggctccccggaatgagaggccccccaggaccagggtgcaaaggagag
cccgggctggatggcaggagaggcgaggatggccttccagggtcccctgggcctccggga
cacaaaggtgacatgggagaagcgggctgcccaggagtaccaggccctcctgggcccgtg
ggggatcctgggcccgaagggttcggccctgtataccccagtggcttcctcctggttctc
cacagtcagacagatggagaacccacctgccccgcgggcatgcccaggctctggaccggg
tatagtctgttatacctggaaggacaggagagagctcacaatcaagaccttggcctggcg
ggctcctgcctccccatgttcagcacgctgcccttcgcccactgcaacatccaccaagtg
tgccagtacgcccggaggaacgacaggtcctactggctggcgagcgccgcgccgttgcct
atgacgccgctctcggaggaggagatccgcccgtacatcagccgctgcgccgtgtgcgag
gcccccgcgcaagccgtggccgtgcacagtcaggaccagtctgtcccgccgtgtccgcgg
gcctggaggagcctctggatcgggtactctttcctgatgcacacaggcgctggggaccaa
ggaggcggccaggccctcatgtcacccggcagctgcctggaggatttcagagctgcaccg
ttccttgaatgccaaggacgtcagggaacttgccacttctttgcaaatgagtatagcttc
tggctgacaactgtgagacctgacttgcagttttcctcagcaccctcaccggacaccttg
aaagaaagccaagcccagcgccagaaaattagcaggtgccaggtctgtgtgaagcatagc
tag
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