Orcinus orca (killer whale): 101290040
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Entry
101290040 CDS
T05247
Name
(RefSeq) general transcription factor IIH subunit 2 isoform X8
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
oor
Orcinus orca (killer whale)
Pathway
oor03022
Basal transcription factors
oor03420
Nucleotide excision repair
oor05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
oor00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
101290040
09124 Replication and repair
03420 Nucleotide excision repair
101290040
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
101290040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oor03021
]
101290040
03400 DNA repair and recombination proteins [BR:
oor03400
]
101290040
Transcription machinery [BR:
oor03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
101290040
DNA repair and recombination proteins [BR:
oor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
101290040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
HscB_4_cys
VWA_3
Motif
Other DBs
NCBI-GeneID:
101290040
NCBI-ProteinID:
XP_004270834
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All DBs
Position
3:complement(129699425..129765690)
Genome browser
AA seq
395 aa
AA seq
DB search
MDEEPERTKRWEGGYERTWEILKEDESGSLKATIEDILFKAKRKRVFEHHGQVRLGMMRH
LYVVVDGSRTMEDQDLKPNRLTCTLKLLEYFVEEYFDQNPISQIGIIVTKSKRAEKLTEL
SGNSRKHIISLKKAVDMTCHGEPSLYNSLSMAMQTLKHMPGHTSREVLIIFSSLTTCDPS
NIYDLIKTLKAAKIRVSVIGLSAEVRVCTVLARETGGTYHVILDESHYKELLTHHVSPPP
ASSSSECSLIRMGFPQHTIASLSDQDAKPSFSMAHLDSNTEPGLTLGGYFCPQCRAKYCE
LPVECKICGLTLVSAPHLARSYHHLFPLDAFQDIPLEEHNGERFCYACQGELKDQHVYVC
TVCQNVFCVDCDIFVHDSLHCCPGCIHKIPAPSAI
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atggatgaagagcctgaaagaactaagcgatgggaaggaggctatgaaagaacatgggag
attcttaaagaagatgaatcaggatcacttaaagctacaatagaagacattctcttcaaa
gcaaagagaaaaagggtatttgagcaccatggacaagttcgacttggaatgatgcgccat
ctttatgtggtagtagatggatcaagaacaatggaagaccaggatttaaagccaaataga
ctgacatgtactttaaagttgttggaatacttcgtagaggaatattttgatcaaaatcct
attagtcagattggaataattgtaacaaagagtaaaagagctgaaaaactgactgaactc
tcaggaaactcaaggaaacacataatatctttgaagaaagctgtagatatgacttgccat
ggagagccatctctttataactccttaagcatggctatgcagactctaaaacacatgccc
ggacatacaagtagagaagtcctaatcatctttagcagtctcacaacctgtgatccatct
aatatctatgatctaatcaagaccctaaaggcagctaaaattagagtgtctgttattgga
ttgtctgcagaggttcgggtttgcactgtgcttgctcgtgaaactggtggcacataccat
gttattttagatgaaagccattacaaagaattgctgacacatcatgttagtcctcctcct
gctagctcaagctctgaatgctcacttattcgtatgggatttcctcagcataccattgct
tctctgtctgatcaggatgcaaaaccctctttcagtatggcgcatctggatagcaacact
gagccaggacttacattaggaggctatttctgcccacagtgtcgggcaaaatactgtgag
cttcctgttgaatgtaaaatctgtggtcttactttggtgtctgctccccacttggcacgg
tcttaccatcacttatttcctttggatgcttttcaagatattcccctggaagaacataat
ggagaaagattttgttatgcctgtcagggggaattgaaagaccaacatgtctatgtttgc
actgtgtgccaaaatgttttttgtgtggactgtgatatttttgttcatgactctctccat
tgttgtcctggctgtattcataagattccagctccttcagctatttga
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