Ogataea parapolymorpha: HPODL_01843
Help
Entry
HPODL_01843 CDS
T08137
Name
(RefSeq) rRNA biogenesis protein RRP5
KO
K14792
rRNA biogenesis protein RRP5
Organism
opa
Ogataea parapolymorpha
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
opa03009
]
HPODL_01843
Ribosome biogenesis [BR:
opa03009
]
Eukaryotic type
90S particles
Other 90S particles
HPODL_01843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
Spt6_S1
TPR_14
Suf
TPR_19
NRDE-2
RNase_II_C_S1
BESS
Motif
Other DBs
NCBI-GeneID:
25771299
NCBI-ProteinID:
XP_013933844
UniProt:
W1QBI6
LinkDB
All DBs
Position
VI:1259849..1264828
Genome browser
AA seq
1659 aa
AA seq
DB search
MVEKQKRKRTETDEAGDNKKSLLSKSAEISFPRGGGSVLTPLEIKEVANEAVSDALAEAK
ESKSSKKSKKQKVIEAPTEQIGVEHVTFKTLLPGSMVLGQIKQVNRMEIVLSLTDNLMGF
IPITNISDPLTSQLQEFDDEQEESDEEPAYGDEENTLTNGIISSKKKSFPQLVTRFQVGQ
WLRAIVMESTKSKKKRIELSIEPSKVNEPMETEDLVTNAIVQASVKSVEDHGLVLDVGKE
KLGGFIAKKDVQSLVDIGSVLLVNIAKKDGRTLICSPINKLSAVQTISSIDAILPGMGVE
ALVTEVTKEGVICKLFGVGNASIPLSHLGVYEYSELKHNFAVGSKLKSRVMVSHVRAGDK
RFLLSVLPHIKSLNANVFGETSALEAFPIGHIFDSVTIKGKDSSYIYVDVGSDFAIGQAH
ITRVSSTKDLDMDFKIGSTHRARVLGYSATDNLYILTLDKQQIERKFLRVEDIPAGELIN
CEVRSVDAEKGIVVKFEEDFEGIVPPAYMSDVKLIYPERKFKIGSKIKGRVLRVVNQSGK
SRIYVTLKKSLVNIENEDVVSSIEDVEAGKKTFATIDKMLPTGCVVRFFGFVKAFLPNSE
ISETFVKRPEDHVKLGQTVKVRVVSVDKENNRIKVSCRVSEVLSDMQKKTLSSIVPGRSI
VDVQVVEKEKDSAIVELTESGLRGIIYAGHLGEGNYEQSRAQLKKLQIGAELKTLVLEKD
VRSRVVKLSAKQSLIKDAQQGKLPLQYRDIEVSDELLHGFVKSVTPNGVFVSFGNGLTGL
ALPRHAVEKPVDDLQKAFFTNQSVTCHVIRVDDANKRFLVSMKKESSTTSEPAENPVDSK
MKTLDDFTVGKNTKAKVKSIKQTQLNVQLADNLQGRIDVSELFDDVSEIKDVKRPLSQFQ
AGEVLDVKIIGFHDSRNHRFLPISHKRTNQTVLELSAKKSSILSHKPVVPASIGDFHLGD
ECTGYINNFARGFLWVTISPNLRARISLMDLSDDASKFENLEKEYPVGSVVRAKVTDLDT
EHNILSLSARSKAITSLEDLEVGSVIPARVLKTRESYVVVELGKQVSGISFITDALNDYT
DKLDDIFSTNDICAATVLEVDHSNKKVYVSLRTKDVKDKRIASYEDLSPGTVVRGFVKNV
ANNGVYVALGRTVHALVRVSDLSDSYLKDWKQYFKVHQPVLGKITKSEGENQILMTLKQS
EIDSDSSLLKRFDQIQKDEIYEGSVRRVTNFGVFVNLDGTLNVSGLCHHSQIADNQVTNI
ESLFSEGDRVKVKILDVDHEKKQLSLGMKASYFTGETEEPAVEEEEDEVMSDDSIIDTAF
GNESEKDAESDYSDDSDAPATGGLSAGFDWTASILDQAKEDVSEDDEMDKPKRKKRKVVA
EDQTADLNSRVPQSVSDFERLIVGNPDSSILWMNYMSFQIQLSEIDKAREIGERALKTIN
YREEQEKLNIWIALLNLENMFGTEESLEATFKRSCQYMDPYVMYQKLAAIYIASEKVDKV
DQLYTAMCKKFGSQHTSVWVAYGSFLLQQQDGERAREVLAKALQVLSKRDHVEVVKKFAQ
LEFSKGDPEHGRSLFEGLLSDVPKRIDLWNVYIDQEIKFGDKKKVEAIFERVVTRKLTRK
QAKFFFGKWLEFEEKHEDQKACDYVKAKAVEYAQGLGKE
NT seq
4980 nt
NT seq
+upstream
nt +downstream
nt
atggttgaaaagcaaaagagaaagagaacagagacagacgaggccggtgacaataagaag
tcgctactctccaagagtgccgagatctcttttcctagaggaggagggtcggtgttgacc
ccgctcgagattaaagaggttgcaaatgaggccgttagcgatgctctagcagaagccaaa
gagtcaaagagcagcaagaaatccaagaaacaaaaagttatcgaagcacctactgagcag
ataggagttgaacatgtgaccttcaagacgcttcttccaggaagcatggttctcggccag
attaaacaggtcaatcgcatggagatcgttctttcattgactgacaacctgatgggtttc
attccaatcaccaatattagtgatccattgaccagtcagcttcaagaatttgatgatgag
caagaagaatctgacgaagaaccagcatatggcgatgaggaaaacactctcacaaatggt
ataatatcttcgaaaaagaagtcgttcccacaactagtcaccagatttcaagtcggacaa
tggctgagagctattgttatggaaagcactaaaagtaagaaaaaacgcattgaactgagc
atcgagccgtccaaagtgaacgaaccaatggaaaccgaggatttggtcaccaacgctatt
gttcaagcttccgtcaagtctgttgaagaccacggattagttttagacgtgggaaaagaa
aaattaggtggtttcattgcaaaaaaagatgtccaatccctggtggacattggctctgtc
ctgctggtgaacatcgccaagaaagatggcagaacacttatttgctctcctattaataag
ctcagtgctgtccaaaccatttcctcgatcgatgcaattctcccaggtatgggtgtcgaa
gccttggtgacggaagtgactaaagaaggtgtcatttgcaagttgttcggcgtcggcaat
gctagcattccgctttctcaccttggggtttacgaatactcagagctgaaacacaatttt
gctgttggtagcaaactcaagtccagagtgatggtttctcatgtcagagctggcgacaag
aggttccttctatctgttcttccgcatatcaaatccttgaacgccaacgtttttggagaa
acttctgccttggaagccttcccaatcggccacattttcgactctgtcactatcaaagga
aaagactcaagctatatatacgtggatgtggggagcgattttgcaattggacaggcgcat
attaccagagtcagcagcaccaaagacttggacatggacttcaaaatcggctccactcac
cgcgcgagagttctgggatactctgccaccgacaacttgtatattctcacactcgacaag
cagcaaatagagcgcaaattcttgcgagtcgaggacatccccgctggtgagctcatcaat
tgcgaggtccgctctgtggatgccgaaaaggggattgtcgtcaagttcgaagaagacttt
gaaggaattgttcctcctgcatatatgagcgatgtgaaattgatttatccagagcgaaaa
ttcaaaatcgggtccaagatcaagggacgtgttttgcgcgttgtcaatcagagcggcaag
tccaggatctatgtgactctgaagaagtcgctcgtcaacatagaaaacgaagatgtcgtt
tccagcattgaggacgttgaggcaggcaagaagacttttgcaaccatcgacaaaatgctt
ccaaccggatgtgttgtgaggttttttggtttcgtcaaggccttcctaccgaactcggaa
atcagtgagacgtttgtgaaacgtccagaagaccacgtcaaacttggacaaacggtgaaa
gtccgcgtcgtttctgtggacaaggaaaataaccgaatcaaggttagctgcagagtgtcg
gaggtattgtcagatatgcaaaaaaagacgctgtcttccattgttccaggtagatccatc
gtcgacgtccaggttgttgagaaggaaaaggactctgccatcgtggagctcaccgaatct
ggtttgcgtggaatcatctatgctggccaccttggtgaaggaaactacgaacaatctcgt
gcccaactgaaaaagctgcaaatcggtgccgagctcaagactttggtgctggagaaagac
gtgcgctcgcgtgtggtgaagttgagtgctaaacaatcacttatcaaagatgcacagcaa
ggaaagctaccactacaatatagagacatagaagtgagcgatgagctgctgcacggcttc
gtgaagtctgtgacgccgaacggagtctttgtcagctttggaaacggcctgacaggtctt
gcgctgcctcgtcacgcggtggaaaaacctgtcgacgacttgcaaaaggctttcttcacc
aaccagtctgtgacgtgtcacgtgatcagggtggacgatgcgaacaagcggttccttgtt
tccatgaaaaaggagagtagcacgacatctgagccggctgaaaaccctgttgacagcaaa
atgaaaactctggacgacttcaccgttggtaagaacaccaaggctaaggtcaaatccatc
aaacagacacagctgaatgttcaacttgcggataatttgcaaggaagaattgacgtgagt
gagctctttgacgacgtttcagagattaaggacgtcaagaggcctctttcccagttccaa
gcaggtgaggtgcttgatgtgaagatcattggtttccacgactcgagaaaccaccgcttc
ctgcctatcagccacaaaagaactaaccagaccgttttagagttgagcgcaaagaaaagc
agcattttgagccacaagccagtggtccctgcttctattggagacttccacctcggcgac
gagtgtacaggatatatcaacaactttgccagaggatttttgtgggtgacgatctctcca
aaccttagagctcgcatttctttgatggacctgtctgacgacgcctcgaagttcgaaaat
ttggaaaaagaatatccggttggttccgtggtgcgtgctaaggtgactgatcttgacacg
gaacacaatattctgagtctgagtgctagaagcaaagctattacttcattggaggacctg
gaagtgggctctgtgattcctgctagagttctgaagaccagagagagctatgtggttgtt
gagttgggcaaacaggtttctggtatctctttcatcacggacgctttgaacgattacact
gataagcttgacgacattttctccaccaacgacatttgtgctgccacggtgctggaggtg
gaccattccaataaaaaagtctacgtttcgctgcgcaccaaggacgtgaaagacaagagg
atcgcatcgtatgaagatttgtctccaggcaccgttgtgcgtggatttgtcaagaatgtc
gccaacaacggtgtctatgttgcattgggaagaactgtccatgcacttgttcgtgtgagc
gatctgtcggactcgtatctgaaggactggaagcagtatttcaaggtgcaccagcctgtt
ttaggtaagatcaccaaaagtgagggtgaaaaccaaattctcatgactttaaagcaaagc
gagattgacagtgattccagtcttctgaaacggtttgatcaaattcaaaaggacgagatc
tatgaaggaagtgtcagaagagtcaccaacttcggtgttttcgtgaaccttgacggaaca
ttaaacgtcagtggattgtgtcatcactctcagatcgcagacaatcaggttacaaatatc
gagtctttgttcagcgaaggtgaccgtgtgaaggtaaagatccttgacgttgaccatgag
aagaaacagctttctcttggtatgaaagcttcgtatttcactggcgagacagaagagccg
gccgttgaggaggaagaagatgaagtcatgtctgatgatagtattattgacaccgctttc
ggaaatgagtccgaaaaggacgctgagtcggattattctgacgactccgatgctcctgct
actggtggtctatccgctggctttgactggactgcttcgattctagaccaggccaaggaa
gacgtttctgaggatgacgagatggacaaaccaaagagaaagaagcggaaggtggttgcc
gaggatcaaactgccgacctgaactcccgtgtaccacagtctgtgtctgacttcgagaga
cttattgttggaaacccagactcatcgatcttgtggatgaactatatgtctttccagatt
caattgagcgaaatcgacaaagcccgtgaaattggcgagcgagcccttaaaaccatcaat
tacagagaggagcaggaaaaactcaatatttggattgctctgttgaacttggagaacatg
tttggcaccgaagagtcactggaagcaactttcaagcgctcgtgccagtacatggatccg
tatgtcatgtaccaaaaattggctgccatttatatcgcctctgagaaggtggacaaggtg
gaccagttgtacacggcaatgtgcaagaaattcggctcacagcatacctctgtgtgggtg
gcctatggatcgttccttcttcagcagcaggatggagaaagggcccgtgaagtgctggcc
aaagccttgcaagttctgtccaaacgcgaccatgtcgaagtggtcaaaaagtttgctcag
ctcgagttcagcaagggagacccagagcacggacgttcattgttcgaagggttattgtcg
gacgttcccaagagaattgatctgtggaacgtctatattgatcaagaaatcaagtttggt
gacaagaagaaggtggaagctatttttgaacgagtggtcacgcgcaagctgactcgcaaa
caggccaagttcttctttggaaaatggttggagtttgaagagaagcacgaggaccagaag
gcttgcgattacgtgaaagctaaagctgtagaatatgcacaaggcctcggaaaagagtaa
DBGET
integrated database retrieval system
