Ogataea parapolymorpha: HPODL_03706
Help
Entry
HPODL_03706 CDS
T08137
Name
(RefSeq) Suppressor of stem-loop protein 1
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
opa
Ogataea parapolymorpha
Pathway
opa03022
Basal transcription factors
opa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HPODL_03706
09124 Replication and repair
03420 Nucleotide excision repair
HPODL_03706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_03706
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_03706
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HPODL_03706
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HPODL_03706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
Htt_bridge
Motif
Other DBs
NCBI-GeneID:
25773141
NCBI-ProteinID:
XP_013935509
UniProt:
W1QFP2
LinkDB
All DBs
Position
IV:1188991..1190277
Genome browser
AA seq
428 aa
AA seq
DB search
MDLDPEFAPSPEHSEDENNDDGKKAPDALKGANGGYAWEDQYRRSWDIVQEDESGSIESI
VSGLVESQKKRYMKNITPFQRGIIRTMVLVLDFSNVMMEKDFRPNRVSVMISNAIEFVGE
FFDQNPISQLSIVIMRNGIAQLVSEVSGNPHDHIEALKNIRKLEPQGYPSLQNALEMCRG
LLLHVASHCTREVLVIFGALFTSDPGNIHKTIQDLVREKITVRVIGLTAQVAVCQELCRM
TNYGDLKNSYHVVLYEQHFKELFMDAVTPLAVTKVESQKKDGFTLVKMGFPSRVSDNQPT
FCSCHSKAVYGGYICPNCKSKVCVLPTVCPCCDLMLILSTHLARSYHHLFPLKLFQEVPV
SEEYSSSHCFGCQAQFPPGVAPSARREYHTSSRYHCQDCNKDFCIDCDVFIHEVLHNCPG
CEADSRKL
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggatttagatcctgaattcgctccctcgcctgaacattcggaagatgaaaacaatgat
gacggcaaaaaggcgccagacgcactgaagggtgccaacggtggctacgcttgggaggac
caatacagacgttcatgggatatagtgcaggaggacgagagcggaagtatagaatcaatt
gtgtctggcctcgtggagtcacaaaaaaagcgatacatgaaaaacattacgcctttccaa
cgtggaatcatccgtacaatggtactggttctggatttctctaatgtcatgatggaaaaa
gattttagacctaatcgagtgtctgtgatgatttccaacgccatagaattcgtcggcgaa
tttttcgaccaaaaccctatttcacagctcagcatagtcattatgcgcaacggtattgct
cagcttgtttctgaagtgagtggcaatcctcacgaccacattgaagcactaaagaatatt
cgcaaactagaacctcaagggtatccttctctacaaaacgctttggaaatgtgccgaggc
cttctgttgcatgttgcttcgcactgcacgcgagaggtgctggtgatatttggtgcccta
ttcacttcagatccaggaaatatacataaaacgattcaggatctggtgcgagagaaaatc
accgtgcgtgtgatcgggttgacagcacaggtggctgtttgccaggagctatgccgcatg
acaaattacggagaccttaaaaattcgtaccatgtggtgttgtacgagcagcattttaaa
gagctatttatggacgctgtcacgccattggcggtgacgaaagttgaatcgcaaaagaaa
gacgggttcacccttgtgaaaatgggattcccctcgcgagtgagtgataatcagccgaca
ttctgctcctgccattcgaaggcggtgtatgggggctatatctgtccgaactgtaaaagc
aaggtatgtgtgctgcccacagtttgtccgtgctgcgatctgatgctaattctgtcgaca
caccttgcacgatcgtaccaccacctgttcccgctgaaactcttccaggaagtgcccgtt
agcgaagagtatagctcgagccactgctttggctgccaagcgcagttcccgcctggcgtg
gccccatcggcgcgacgagagtaccacacgagctcgcggtaccactgccaggactgcaat
aaggacttttgcattgactgcgacgtgttcatccacgaggtcttgcacaactgcccgggc
tgcgaggctgatagcagaaagctataa
DBGET
integrated database retrieval system
