Ogataea parapolymorpha: HPODL_04144
Help
Entry
HPODL_04144 CDS
T08137
Name
(RefSeq) RNA polymerase II transcription factor B subunit 2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
opa
Ogataea parapolymorpha
Pathway
opa03022
Basal transcription factors
opa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HPODL_04144
09124 Replication and repair
03420 Nucleotide excision repair
HPODL_04144
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
opa03021
]
HPODL_04144
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_04144
Transcription machinery [BR:
opa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
HPODL_04144
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
HPODL_04144
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
25773574
NCBI-ProteinID:
XP_013934403
UniProt:
W1QD50
LinkDB
All DBs
Position
V:complement(676887..678521)
Genome browser
AA seq
544 aa
AA seq
DB search
MSEPSASSGQSELFKSTINEYLDNLPETVHLQLYRSPETCLAVFRLLPSLAKFYIMTMLF
QDAAIPSTDLNRWIKSSSFNGSRNLSKIYQNDSLKRLKALNLLKETRRIFTHPQTGQTTQ
LPFVSLNPTFRQSFRNALTGSRDANEVVEDNNLESIETISVEFLDTYCLHRWESILHFMV
GSETKELPSVGVLTLLRYSGLMELPSDREQREHLGDDYEFQPKLQQSSSIQTLKNLLITQ
NGFQFLLQDINSQIWTLLLQYLKMSEKLMMNPVEVLNFIFMLGSLELGQGYPVDPLSDTQ
KIMLDDLIDYGLIYTPSKTNKKIFYPTRLATTLTSEHTNFKTSAAVIDQEITNSKNSNNQ
GTIVVETNFKIYCYTSSPLQIAILNLFVHLKARFANMVTGVITRESVRRALINGITADQM
INYLGSHAHPWMVKQAEDKLARKLELESSIGNAAGQRQIDLEILPPTVVDQIKLWQLELD
RIQSFKGYLYKDFSTDLEFEKLLTYGEEIGVIVWKDRARKRFFVTQEGNGQLLDYANRII
RGNS
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagccgtccgcgtcatcaggccagtcagaactctttaaatcgacgattaatgag
tatcttgacaacttacctgagaccgttcatttacagctttacaggtcgcctgaaacttgt
ctggccgtgttccgattattaccatcgctcgcaaagttttacatcatgaccatgttgttc
caagacgctgcaattccctctactgatttgaaccggtggattaagtctagctctttcaat
gggtcgcgcaacttaagcaaaatttatcaaaatgactcgctaaagcgacttaaagcattg
aacttgctcaaggaaacaagacgtatattcactcatccgcaaactggccagacgacacaa
ttaccctttgtctcgctgaatccaacctttagacaaagctttagaaatgcattgacagga
agtcgagatgcaaacgaggttgtggaggataacaatctggaaagtatagaaacgataagc
gttgagtttctggacacatattgtttgcacaggtgggagagcatattgcattttatggtg
ggctcggaaactaaagagctaccaagtgtgggtgttttaactttacttagatacagcggg
ttgatggagctcccgtcggacagagaacaaagagagcatctaggcgatgactacgaattt
cagcccaaattacaacagtcatcttccattcaaacactaaaaaacttgctcattacacag
aacgggtttcagtttcttctgcaagatatcaactctcaaatttggacactattattgcaa
tacttaaaaatgtctgaaaaacttatgatgaaccctgtcgaggtactgaattttatcttc
atgctggggtccttggagcttggacaaggatatccggtggatccattgagtgatacgcag
aagataatgctggacgatcttattgattatggactcatttacactccttcaaagacaaat
aaaaagatattctatcccacgcgattggcaacgaccctgacttccgaacacacgaacttc
aagacctcagcggccgtaatcgaccaagaaatcacaaactcgaaaaacagcaacaaccaa
ggcactatcgtggtggaaaccaatttcaaaatatactgctacacatcttcgccgttgcag
attgccatcttgaatctgtttgtgcatctcaaagcccggtttgcaaacatggttacaggg
gtaatcaccagagaatccgttcgtcgcgctctgattaacggaatcactgcagaccagatg
atcaactatttgggttctcatgcgcatccttggatggtgaagcaagccgaagacaaatta
gcacgcaaattagaactcgaaagttctattggtaatgctgcgggtcaaagacaaatagac
ctcgaaattctaccgccgacagtggtggatcaaattaaactttggcaattagagcttgac
cgtatccaatcattcaaaggttatctttacaaagatttctctaccgacttggagtttgaa
aagctgcttacttatggtgaagaaattggcgtgattgtttggaaagaccgcgctagaaag
cggttctttgttacccaggaaggtaacggacaactactcgattacgcaaataggatcata
cggggtaatagctaa
DBGET
integrated database retrieval system
