Ogataea parapolymorpha: HPODL_04963
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Entry
HPODL_04963 CDS
T08137
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
opa
Ogataea parapolymorpha
Pathway
opa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
opa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HPODL_04963
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
opa03400
]
HPODL_04963
Enzymes [BR:
opa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HPODL_04963
DNA repair and recombination proteins [BR:
opa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
HPODL_04963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
BRCT_2
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
25774386
NCBI-ProteinID:
XP_013936796
UniProt:
W1QIL8
LinkDB
All DBs
Position
II:complement(794839..797277)
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AA seq
812 aa
AA seq
DB search
MRISKENEDYKKIAGWKKIGFNKLQSSLKFADLLSNIISKRRIDKLTAQLTVDDVNAYLD
KLHELADSDTDSKAKVFEEILDKTNNIELRFFFRIVLKINPIRRDKLFLYCWHPDSLDVF
DLTHDLKFVFWGLTDPKIRLESKEKHSRPMYPFTPQRAKRIHLDYDLVAQKFSGQFLIEE
KYNGERIQLHVEKTPNGYDYRFFSRNAIDYSSIYGRSSDPSSIGCISPFLKDALVDGVQS
CILDGEMVSYDPVKNMTLPFSTLKPTALKDLKSQKKDDPRPMYMVFDILHLNGCSLEDYK
LMDRKKALERVMNTVRHRVEVVPYELKSTGQDIENSLKLAIRKDLEGLVLKDPNSRYEIG
NYTTETWIKVKPEYLHEFGENLDLVIVGQIPAAKTTYICALRDSETSDSFTTLCGVSNGF
SVDDYRKIQQMTAGKWHQWGKEQPTNVKFGKKTPLMWIDPKESVVIEVKSSSISVQAENN
YATGSTLYAAYCTKIREDKTWETADTLETYQNSKLERDYEASHTLAKKRKLASTKKDDII
QRINRGYRSNVDPSNQLFKNYVFCIMTDCMFRGELCKISELGQILQTYGGTVVRNPNTIL
SPEQKLIILADKITMDILELQQTYNIFKAKWCDDCILMNRLVNLEPSHITAADPELWQRS
KRNVDRYGDSMCVDFTVQSFTELVEENYKKGIAPTPNGSPETSEITQLFVFHGVRFYLLW
RNENRYRMYRSMVVAGGGKIADDWRDAGYIVAIDPYEAIAKELENQLAASSDSKENFRRI
VDATFVLDSFKQGMLVDPEDYRIGVGYSSHPE
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgcgaatttcgaaggaaaatgaagattataagaagattgccggttggaagaaaatagga
ttcaacaagctccaatcctcccttaagtttgcagatttactcagcaacataatcagtaaa
cgtcgcattgacaaattgacggcacaattgaccgttgatgatgtgaacgcctatctcgat
aagctgcacgagctggctgattctgataccgatagcaaagccaaagtgtttgaggaaatc
ttagacaagacgaacaatatcgagcttcgatttttctttagaattgttctcaaaattaac
cctattcgccgcgacaaactgttcctgtactgttggcatccggactcattggatgtcttc
gacctgactcatgatctgaagtttgtattttggggcctcacagaccctaaaattagactt
gaatctaaggaaaagcactcaagacccatgtatcccttcactcctcagagagcaaaacgg
atacacctcgattacgatttggtagcacagaaattctcagggcaatttctaatcgaagaa
aagtacaatggtgaaaggattcaattacacgtcgaaaagaccccaaatggatatgattac
aggtttttcagcagaaatgccatcgactattcctctatctatggtagatcttctgatccg
agctcaattggatgcatctcgccgtttctgaaagatgctctagttgacggtgtgcaaagt
tgtattcttgatggagaaatggtcagctacgatcctgtgaagaatatgacacttccattt
tcaacccttaaaccgacggctctcaaagacctcaagtcccagaaaaaagatgaccctcgt
ccaatgtacatggtttttgatattcttcatttgaacggctgttcgttggaggattataag
ttgatggatcgaaaaaaagctctagaaagagtcatgaacactgttcgccaccgggttgag
gtggtgccttatgagctcaaaagtacgggacaagatatcgaaaatagtctgaaattagct
atacgtaaagaccttgaaggcttggtgttgaaggatcccaattcaagatacgagattgga
aattacactacagagacctggatcaaagtcaagcccgaatatttgcacgagttcggtgag
aatcttgatcttgttatcgttggacagataccagcagcaaagacaacttacatatgtgcg
ctacgcgattctgaaaccagcgatagtttcactactctctgcggagtctctaacggattc
tctgttgatgactatcgcaaaatacagcagatgacggctggaaagtggcatcaatggggt
aaggaacaaccaacaaatgttaagtttggaaagaagacacccttgatgtggattgaccca
aaagagtctgtggtgattgaggtgaagtcaagttcaatcagcgtgcaagcggagaacaat
tatgccacagggtccacattgtacgctgcctattgtaccaagatcagagaagataaaacg
tgggagacggcagatacgctggagacgtaccagaactccaagctagaacgcgattatgag
gctagtcacactttggccaaaaaaagaaaactggctagcacgaaaaaggacgatatcatt
cagcggatcaaccgaggctaccggagcaacgtggatccttccaatcaattattcaaaaac
tacgttttctgcattatgacggattgcatgttcagaggtgaactttgcaagataagcgag
ttgggccaaatattacaaacttacgggggaactgttgtaagaaatcccaataccatactt
agtcctgagcaaaagttgattatattggcggataagatcacaatggacatcctagagctc
caacaaacttataacatatttaaggcgaaatggtgcgatgattgcatccttatgaatcgt
ctagtcaatttggagccctcgcatattacggctgcagatcctgagctttggcaacgttcg
aagcgcaacgttgataggtatggagatagcatgtgtgttgatttcaccgtgcagagtttt
acagaactcgttgaagaaaactacaagaaaggcatagcaccgactccaaatggtagccca
gaaaccagcgagataacccagcttttcgttttccatggtgtgcgcttttacctgctatgg
agaaacgagaataggtacaggatgtacaggagcatggtagtagccggaggaggaaaaatt
gctgacgattggagagatgccgggtacatcgtcgcaatagatccctatgaggcaatagcc
aaagaactggaaaaccaattggctgcatcaagtgactctaaagagaatttccgccgcatt
gttgatgccacttttgtccttgattcttttaaacaaggaatgctagttgatcctgaggac
tacagaattggtgttggctactcctcgcaccccgaataa
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