KEGG   Ogataea parapolymorpha: HPODL_04991
Entry
HPODL_04991       CDS       T08137                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
opa  Ogataea parapolymorpha
Pathway
opa03030  DNA replication
opa03410  Base excision repair
opa03420  Nucleotide excision repair
opa03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:opa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    HPODL_04991
   03410 Base excision repair
    HPODL_04991
   03420 Nucleotide excision repair
    HPODL_04991
   03430 Mismatch repair
    HPODL_04991
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:opa03032]
    HPODL_04991
   03400 DNA repair and recombination proteins [BR:opa03400]
    HPODL_04991
Enzymes [BR:opa01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HPODL_04991
    6.5.1.6  DNA ligase (ATP or NAD+)
     HPODL_04991
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     HPODL_04991
DNA replication proteins [BR:opa03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    HPODL_04991
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     HPODL_04991
DNA repair and recombination proteins [BR:opa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     HPODL_04991
   NER (nucleotide excision repair)
    Other NER factors
     HPODL_04991
   MMR (mismatch excision repair)
    Other MMR factors
     HPODL_04991
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 Membralin
Other DBs
NCBI-GeneID: 25774414
NCBI-ProteinID: XP_013936826
UniProt: W1QIP9
LinkDB
Position
II:complement(841963..844110)
AA seq 715 aa
MFARLGIRSMTATQKQQTLSRFFGSQGERSMAKKRSRSPSPASSKKALKSDDTKESTPED
SVADVADDAKERLIDAKELLKMESEVKVPDLAIGKPIPYSKLCEVFEALEKESGRLKCIE
IASEMFSHVLDVSENQEDQIRNLVEVNYLTINRVCPDYEGLELGLGETLLMKALATGTGR
SMQQLKKDLGEYGDIGLVAQKSRSKQSLMFKPQPLTVSQVFKNLKEIASMSGASSQNKKI
AMINRMLTSCDSREAKFLMRSLEGTLRIQFAEKSVVVALAKALVEHEMKQRGQKVTPAIL
SEAEEQMKEAFSQTPNYELIIETAIKYGTLNLMDHCTLKPGIPLKPMLAKPTKSITEILN
QFENQEFSCEYKYDGERAQVHLLPDRTLRVYSRSSENMTQRYPDLIPVMEELQRLNPEVK
SFILDCECVAWDKKQEKILPFQILSTRKRKDVKEEDITVQVCLFAFDILLYNGESLLQKS
LKERRQYMYDNLKIIPGKFRFSEKLDSSDLDVITKFLDQSVKDSCEGLMIKTLNGTNSLY
EPSKRSRNWLKLKKDYLEGVGDSLDLVVIGAYVGKGKRTGGYGGFLLASYNPDSGEFEAI
CKIGTGFSEEMLASLFEKLKPTQLDKPKASFVYDKTNPRAAPDIWFEPTTLFEVKVADFT
ESPLYKCGYSYLGDGSKGVSLRFPRFVRIRDDKSVEDATTSEQIVEMYEKQAHLS
NT seq 2148 nt   +upstreamnt  +downstreamnt
atgtttgcaagactaggaataagaagcatgacggccacccaaaaacagcagacattatct
cgattcttcggttctcagggcgagcgttccatggccaagaagcgatcgcgtagtccatcg
cccgcgtcatctaaaaaggccctcaaaagcgacgacacaaaggagagcacgccagaggat
tctgttgcagatgtcgcagacgacgccaaggaaaggctgatcgacgccaaagagcttctc
aagatggaatcggaggtcaaagttcctgacttggccatcggaaaacccatcccctatagc
aagttgtgcgaggtatttgaggctttagaaaaagagtccggcagactcaagtgcatcgaa
atcgcctccgagatgttttctcacgtgctggacgtttctgaaaatcaggaagaccagata
cggaaccttgttgaggtcaattacctaactatcaatagggtgtgcccagattacgagggt
cttgagttgggactaggcgagactctacttatgaaagcactggccacaggtactggccgt
tcgatgcagcagctgaaaaaagatcttggagagtatggcgacattggcctggttgctcaa
aagtcgagatcgaagcaaagtttgatgtttaagccgcaaccgttgacagtgtctcaggta
tttaaaaatctcaaggaaattgcaagcatgtcgggggcctcttcgcagaataaaaaaatt
gccatgatcaacagaatgctgacgtcctgcgactcgcgcgaggccaaattcctgatgaga
tcgttggaaggcaccttgcgcatccaatttgcagagaaatcggttgtggttgcattggcc
aaggctttagtggagcacgagatgaagcagcggggccaaaaagtgactcctgcgatcttg
agtgaggctgaggagcagatgaaggaggcattttcgcagacgcccaattacgagctgatc
atcgagaccgcgataaaatacggaactctcaatctcatggaccactgcacgctgaagcca
ggaatacccctcaagccaatgcttgcgaaaccaaccaagtctatcacggagatcctcaac
cagttcgagaaccaagagttctcgtgcgagtacaaatacgatggcgaaagagcacaggtt
cacttgctacctgaccgaacgcttagagtttactccaggagctctgaaaacatgacccaa
agatatccagacttaattccggtcatggaggagcttcagaggctgaatccagaagtgaaa
tcgtttattttggactgcgagtgtgtggcatgggacaagaagcaggaaaagatccttcca
ttccagatcctgtcaaccagaaagcgcaaggacgtgaaggaggaagacataacggtgcag
gtgtgtttgtttgcctttgacatcctgctgtacaatggcgagtccttactccaaaagtcc
ctgaaagagcgcagacaatacatgtacgacaatctgaagattatccctgggaagttccgt
ttctctgagaaactcgactcctccgatttagatgtcatcacgaagttccttgaccagtcc
gtcaaggactcttgcgaaggtttgatgatcaaaacgcttaatgggacgaacagtttatac
gagccatccaaaagatctaggaactggctcaagctgaagaaagattatttggagggagtt
ggagactctctggatctcgttgtcattggtgcatatgttggcaagggaaagcgtactgga
gggtacggtgggtttttgctggctagctacaacccagatagtggcgagtttgaggcaatc
tgcaaaattggcaccggctttagcgaagagatgcttgcttcattatttgaaaaactaaag
ccaacacagttggacaagcctaaagcgtcgtttgtgtacgataagacgaatccgcgtgca
gcaccagatatctggtttgaaccaacaacgctgtttgaggtgaaagtggcggactttacc
gagagtcctctttacaaatgcggctacagttatttgggagacggttccaaaggagtgtca
ttgagatttccacggtttgtgcggatcagagatgacaagagcgttgaggatgcgacgaca
agcgagcagatagtggagatgtacgagaaacaggcacatcttagctga

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