Oceanimonas pelagia: PU634_08435
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Entry
PU634_08435 CDS
T09373
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ope
Oceanimonas pelagia
Pathway
ope03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ope00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PU634_08435 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ope03400
]
PU634_08435 (mfd)
Enzymes [BR:
ope01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PU634_08435 (mfd)
DNA repair and recombination proteins [BR:
ope03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PU634_08435 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WMC12377
UniProt:
A0AA50KSV1
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All DBs
Position
1769707..1773144
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AA seq
1145 aa
AA seq
DB search
MIEISSPVPKPRASLGGLIGSSLALAIASQVKRQSQRVLLVVPDTPTALRLEQEVRHLLA
DDALPVRLLPDWETLPFDQFSPHQDIISQRLETLYGLPALSRGLLIVPVTTLMLRTPPRA
WLEQNSLLLKVGDRLDLHHLRQRLEQAGYRAVEQVLEHGEFAARGALLDLFPMGAEEPVR
IDFFDDEIDTLRPFDPDSQRSKDKVKEVRLLPAREFPTDSAAIERFRGQYRERFQLRNEP
ESLYHRVSQGQLPPGIEYYFPLFFEQTQTLFDALPENMQVLAVGDIEPAAQAFWRDVNER
YEDRRHDLLRPLLAPDELYLKPDALMHQLNRWPRLQLSQSPVPEKGDRVNAPVRALPELE
VEHQKTEPLARLLGFCQQFAGRVLFSVESAGRREALTELLAGSPLRLTPVDSLNDFANSK
DKIGLLVGPLAQGFVLGEEFALICEGDLLGGRVIQRRRREKSASLSPDTLIRNLAELSIG
QPVVHLDHGVGRYMGLQSLDAGGMKSEYLTLEYAGGDRLYVPVTALHLVGRYSGADEPTL
NRLGNDAWARAKRKAAEKVRDVAAELLDVYARRAAQPGQAIAHDKNAYRQFCDAFPFEET
DDQLKAINAVLTDMTQPRAMDRLVCGDVGFGKTEVAMRAAFVAVHGGKQVAVLVPTTLLA
QQHYDNFRDRFANWPVKVELISRFKTGKEQDKALEGLADGSIDIVIGTHKLLSQDVRFKD
LGLLIVDEEHRFGVRQKDKIKALRADVDILTLTATPIPRTLNMAMGGMRDLSIIATPPAK
RLAVKTFVRESDPTVVREAILRELKRGGQVYYLHNEVQTIENSLDALRTLVPEARIGIAH
GQMRERELEKVMSDFYHQRFNVLLCSTIIETGIDVPSANTIIMDRADKLGLAQLHQLRGR
VGRSHHQAYAYLLTPHPKRMTTDAKKRLEAIAALEDLGAGFALATHDLEIRGAGELLGDE
QSGQITAIGFSLYMEMLEQAVKALQSGKEPALDKLLGSQTEIELRLPALLPDDYIPDVNM
RLSMYKRIAAADSDAALRELQVELIDRFGLLPEPGKNLIALSALKAKASALGIEKIDAGP
QGGTISFGQDARVDPGYLVGLLQSQPRIYKMEGPSKLRFAIPSADAKARLALVGDMLNEF
AAHQA
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgattgagatttccagccccgttcccaagcccagggccagcctgggcggcctgattggc
agcagcctggccctggccattgccagccaggttaaacgacaatcccagcgcgtgctgctg
gtggtacccgatacccccaccgccctgcgcctggagcaggaagtgcgccacctgctggcc
gacgacgccctgccggtgcggctgctgcccgactgggaaaccctgccctttgatcagttc
tcgccccatcaggacattatctcccagcggctggaaaccctctatggcctgcccgcactc
agccggggcctgctgattgtgccggtcaccaccctgatgctgcgcaccccgccgcgggca
tggctggagcagaacagcctgttgcttaaggtgggcgaccggctcgacttgcaccatctg
cgccagcgcctggagcaggccggctaccgcgcggtggagcaggtgctggagcacggcgaa
ttcgccgcccggggcgcattgctggatctgttccccatgggcgccgaggagccggtgcgc
atcgactttttcgatgatgaaatcgacaccctgcgcccctttgacccggacagccagcgc
tcaaaggacaaggtcaaggaagtgcggctgctgccggcccgggaatttcccaccgacagc
gccgccatcgagcgctttcgcggccagtaccgggagcgctttcagcttcgcaacgagccg
gagtcgctctaccatcgcgtcagccagggccagctgccaccgggcattgaatattatttc
ccactgttctttgaacagacccagaccctgttcgacgccctgcccgagaacatgcaggtg
ctggcggtgggcgatattgagccggcggcccaggccttctggcgggatgtgaacgagcgc
tatgaagaccgccgccacgacctgctgcggccgctgctggcccccgacgagctgtattta
aagcctgatgccctgatgcaccagctgaaccgctggccccggctgcagctgagccagagc
ccggtgccggaaaagggcgatcgcgttaacgccccggtgcgggccctgcccgagctggaa
gtagagcaccagaaaaccgagccgctggcgcggctgcttggcttttgccagcagtttgcc
gggcgcgtgctgttttcggtggaaagcgccggccggcgcgaggccctgaccgagctgctg
gcgggctcaccgctcaggctcacgccggtggacagcctgaatgactttgccaacagtaaa
gacaagatcggtttgctggtggggccgctggcgcaaggctttgtgctgggcgaggaattt
gccctgatctgcgaaggcgacctgctcggcggccgggtcattcagcgccggcggcgggaa
aagtccgccagcttaagccccgacaccctgatccgcaacctggcggagctgtccatcggc
cagccggtagtgcacctggatcacggcgtgggccgctacatgggcctgcaaagcctggac
gccggcggcatgaagtcggaatacctcaccctggaatacgccggcggcgacaggctctat
gtgccggtcaccgccctgcatctggtgggccgctacagcggcgccgacgagcctacctta
aaccgccttggcaacgacgcctgggccagggccaaacgcaaggccgccgaaaaggtgcgc
gacgtggccgccgagctgctggacgtatacgcccgccgggccgcccagccgggccaggcc
attgcccacgacaagaacgcctaccgccagttctgcgacgcctttccctttgaggaaacc
gacgatcagctcaaggccatcaacgccgtgcttaccgacatgacccaacccagggccatg
gaccggctggtgtgcggcgacgtgggctttggcaagaccgaagtggccatgcgcgccgcc
tttgtggcggtgcacggcggcaagcaggtggcggtgctggtgcccaccaccttgctggcc
cagcagcactacgacaactttcgcgaccgcttcgccaactggccggtgaaggtggagctg
atcagccgctttaaaaccggcaaggagcaggacaaggcgctggaagggctggcggacggc
agcatcgatattgtgatcggcactcacaagctgctgagccaggatgtgcgcttcaaggat
ctgggcctgctgatcgtggacgaggagcaccgcttcggcgtgcgccagaaggacaagatc
aaggccctgcgcgccgacgtggacattctcaccctcaccgccacccccattccccgcacc
ctgaacatggccatgggcggcatgcgggatctctccattatcgccacgccgccggccaag
cggctggcggtgaagacctttgtgcgcgagtcggatccgaccgtggtgcgcgaggccatt
ctgcgggagctcaagcgcggcggtcaggtctattacctgcacaacgaggtgcagaccatc
gaaaacagcctggacgccctgcgcaccctggtgcccgaggcccgcattggcatcgcccac
ggccagatgcgcgagcgggagctggaaaaggtgatgtcggacttctaccaccagcgcttt
aacgtgctgctgtgctccaccatcattgaaaccggcatcgacgtgcccagcgccaacacc
attatcatggaccgggccgacaagctgggcctggcgcagctgcaccagctgcgcggccgg
gtgggtcgttcccatcatcaggcctatgcctatttgctgaccccccaccccaagcgcatg
accacggacgccaaaaagcggctggaggccattgccgcgctggaagatctgggcgccggc
tttgccctggccacccacgatctggaaattcgtggcgccggcgaactgctcggcgacgag
cagagcggccagattaccgccattggcttcagcctttatatggaaatgctggagcaggcg
gtgaaggcgctgcagtcgggcaaggagccggcgctggacaaactgctgggcagccagacc
gagattgaactgcgcctgcccgcgctgctgccggacgactacattcccgacgtcaacatg
cgcctgtccatgtacaagcgcattgccgccgccgacagcgatgccgccctgcgcgagctg
caggtggagctgatcgaccgctttggcctgctgccggagccgggcaaaaacctgattgcg
ctttccgccctcaaggcaaaagccagtgccctgggcattgagaagatcgacgccggcccg
caggggggcaccatcagctttggccaggacgccagagtggatcccggttatctggtgggg
ctgttgcaaagtcagccgcgcatctacaaaatggagggcccgagcaagctgcgctttgcc
attcccagtgccgatgccaaggcccggctggccctggtgggcgacatgctcaatgaattt
gccgcgcatcaggcctga
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