Ochotona princeps (American pika): 101516860
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Entry
101516860 CDS
T07609
Symbol
SBNO1
Name
(RefSeq) protein strawberry notch homolog 1
KO
K26273
protein strawberry notch
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
opi03036
]
101516860 (SBNO1)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
101516860 (SBNO1)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
AAA_34
Helicase_C_4
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
101516860
NCBI-ProteinID:
XP_004595464
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All DBs
Position
21:835240..872175
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AA seq
1183 aa
AA seq
DB search
MVEPGQDLLLAALSESGISPNDLFDIDGGDVGLGTPTPTPAVQQSVPLNALELSVEPEAA
VPAKPEPEAVPPAALLNMRQQPPSTTTFVLNQISQLPTLGSTIVMTKTPPVTTNRQTITL
TKFMQTTASTRPSASAPAVRAAASPASSKEQVQLKDLLKNNSLNELMKLKPPPNIAQPVA
TAATDVSNGTVKKESSNKEVARIWINDMKMRSFSPTMKVPIVKEEDEPEEEDEEEMGHAE
TYAEYMPIKLKIGLRHPDAVVETSSLSSVTPPDVWYKTSISEETIDHGWLSALQLEAITY
AAQQHETFLPNGDRAGFLIGDGAGVGKGRTIAGIIYENYLLSRKRALWFSVSNDLKYDAE
RDLRDIGAKNILVHSLNKFKYGKISSKHNGSVKKGVIFATYSSLIGESQSGGKYKTRLEQ
LLHWCGSDFDGVIVFDECHKAKNLCPVGSSKPTKTGLAVLELQNKLPKARVVYASATGAS
EPRNMAYMNRLGIWGEGTPFREFSDFIQAVERRGVGAMEIVAMDMKLRGMYIARQLSFTG
VTFKIEEVLLSQSYVKMYNKAVRLWVIARERFQQAADLIDAEQRMKKSMWGQFWSAHQRF
FKYLCIASKVKRVVQLAREEIKNGKCVVIGLQSTGEARTLEALEEGGGELNDFVSTAKGV
LQSLIEKHFPAPDRKKLYSLLGIDLTAPSNNSSPRDSPCKESKVKKRKVLNITEKQRFMH
GDKNIAIISEAASSGISLQADRRAKNQRRRVHMTLELPWSADRAIQQFGRTHRSNQVTAP
EYVFLISELAGEQRFASIVAKRLESLGALTHGDRRATESRDLSRFNFDNKYGRNALEIVM
KSIVNLDSPMVSPPPDYPGEFFKDVRQGLIGVGLINVEDRSGILTLDKDYNNIGKFLNRI
LGMEVHQQNALFQYFADTLTAVVQNAKKNGRYDMGILDLGSGDEKVRKTDVKKFLTPGYS
TSGHVELYTISVERGMSWEEATKIWAELTGPDDGFYLSLQIRNNKKTAILVKEVNPKKKL
FLVYRPNTGKQLKLEIYADLKKKYKKVVSDDALVHWLDQYNSSADTCTHAYWRGNCKKAS
LGLVCEIGLRCRTYYVLCGSVLSVWTKVEGVLASVSGTNVKMQIVRLRTEDGQRIVGLII
PANCVSPLVNLLSTSDQSQQLAVQQKQLWQQHHPQSIASLSNA
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggtggaaccagggcaggatttactgcttgctgctctgagtgagagcgggattagtccc
aatgacctctttgatatcgatggtggcgatgtggggctgggaaccccaacccccactcct
gcagttcagcagtcagtgccacttaacgcattagaactcagtgtggagcctgaagcagca
gttcctgctaaaccagagccagaggctgtccctcctgcagcactgttaaacatgaggcag
cagccgccatccacgacgacattcgtgctcaaccagatcagccagcttcccaccttgggg
tctacgattgtcatgaccaaaacgccacctgtaacaaccaataggcaaaccatcacttta
acgaaattcatgcagacgactgcgagcactcggccttctgcctcggccccggcagtgcgg
gctgccgcgagccccgcctcttccaaggagcaggtgcagctgaaggatctgctcaagaac
aacagtctgaacgagctcatgaagctcaagccgcctccgaacatcgcgcaacctgtggcc
acggcagccactgatgtaagcaatggtacagtgaaaaaagagtcttctaacaaggaggtg
gcgaggatctggataaatgacatgaagatgcggagcttctccccaaccatgaaggtaccc
attgtaaaggaggaagatgagcccgaggaagaagatgaagaagaaatgggtcatgcagaa
acctatgcagaatatatgccgataaaattaaaaattggcctacgccatccagatgctgta
gtggaaactagctctttatccagtgttacacctcctgatgtttggtacaaaacgtctatt
tctgaagaaactattgaccacggctggttgtcagcgttgcagctggaggcgattacatat
gctgcccagcaacatgagacattcctccctaatggagaccgtgctggcttcttgatcggt
gacggtgccggggttggcaaaggccggacgatagcgggcatcatctatgagaactacctg
ctgagcaggaagcgagcgctttggtttagcgtctcaaatgacttaaagtatgatgctgag
agagatttgagagatatcggagcaaagaacatcttggtgcattcactaaataagtttaaa
tatggaaaaatttcttccaaacataatgggagtgtgaaaaagggtgttatttttgccacc
tattcttcccttattggtgaaagccagtctggtggtaaatacaaaacaagattggagcag
cttctccattggtgcggcagtgacttcgacggagtgatagtgtttgatgagtgtcataaa
gcaaaaaacttatgtcctgttggttcttcaaaacccaccaagacaggcttagcagtttta
gagcttcagaacaaattgccaaaagccagagttgtttacgctagtgccactggtgcgtcc
gaaccacgtaacatggcctacatgaaccgtcttggaatatggggtgagggaacgccattt
agagaattcagtgattttattcaagcagtagaaagaagaggtgtaggtgccatggagatc
gtcgctatggacatgaagcttcgagggatgtacatcgcacgacagctgagcttcactgga
gtgaccttcaaaatcgaggaagtgcttctttctcagagctatgtgaaaatgtataacaaa
gcagtcagactgtgggtcattgccagggagcgatttcagcaagctgctgatctgatcgat
gctgagcagcgaatgaagaagtccatgtggggtcagttctggtctgctcaccagaggttt
ttcaagtacttgtgtatagcttccaaagttaaaagagttgtgcaactagcccgggaagaa
atcaagaatggaaaatgtgtggtcattggtctgcagtccacaggagaagctagaacctta
gaagccttggaagagggcggtggagaattgaatgattttgtttcaactgccaaaggagtt
ttgcagtccctcatagaaaagcactttcctgctccagacagaaaaaaactttacagttta
ctaggaattgatttgactgctccaagtaataacagttcacccagagatagtccctgtaaa
gaaagtaaagtgaagaagcgaaaagtactgaacatcaccgagaagcagaggttcatgcat
ggagataagaacattgcgatcatctcggaggctgccagctcaggcatctcattacaagca
gatcggagagccaaaaaccagaggcggagagttcacatgactttggagttaccgtggagt
gctgatagagccattcagcagtttggaagaactcacagatcgaaccaagtcactgctccc
gagtatgtctttttgatttcggaattggcgggagagcagagatttgcgtccattgtggct
aagagacttgaaagtctgggtgcgcttacccatggggacagaagggcaacagagtccagg
gacctgagccggttcaactttgacaacaagtatggaagaaatgctttagaaattgtcatg
aagtccattgttaacttggattctcctatggtatctccacctccagattatcctggagag
ttctttaaagatgttcgtcaaggattgataggagtcggcttgatcaatgtggaagatcgc
tcaggaattcttactctggataaagattataacaacataggaaaattcttaaatagaatt
ttgggtatggaggtgcatcaacagaatgcgttatttcagtattttgcggacacacttact
gcagttgttcaaaatgccaaaaaaaatggaagatatgacatgggaatcttagatcttgga
tctggagatgaaaaagtgaggaagactgatgttaagaagttcctgactccaggatactca
acttctgggcatgtggagttgtacacgatcagcgtagaaaggggaatgtcttgggaggaa
gccaccaaaatttgggcggaactgacaggaccagatgatggtttttatttgtctttacaa
ataagaaacaacaagaaaactgccatcttagtcaaagaagtgaaccccaaaaagaagctt
ttcctggtttatcgaccaaatactgggaaacagctgaagttagaaatttatgcggatcta
aaaaagaagtataaaaaggtcgtctcggatgacgccttggtgcactggctggatcagtat
aattcgtctgcagatacttgcactcatgcttactggcgtggcaattgcaaaaaagccagt
ttgggattagtctgtgaaataggtctccgatgccgcacttactatgtcttatgtggctca
gtactcagtgtgtggacaaaagtggagggtgttctggcatctgtcagtgggacaaatgtg
aaaatgcagatagtgcggctaagaacagaagatggacagcgaattgtaggtttgatcatt
ccggcaaattgcgtgtctccgcttgtcaatcttctctccacttccgatcagtcccagcag
cttgcagtgcagcagaagcagctgtggcagcagcatcacccgcagagcatcgccagcctg
agcaacgcctag
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