Ochotona princeps (American pika): 101517199
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Entry
101517199 CDS
T07609
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03030
DNA replication
opi03410
Base excision repair
opi03420
Nucleotide excision repair
opi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101517199 (LIG1)
03410 Base excision repair
101517199 (LIG1)
03420 Nucleotide excision repair
101517199 (LIG1)
03430 Mismatch repair
101517199 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
opi03032
]
101517199 (LIG1)
03400 DNA repair and recombination proteins [BR:
opi03400
]
101517199 (LIG1)
Enzymes [BR:
opi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101517199 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
101517199 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
101517199 (LIG1)
DNA replication proteins [BR:
opi03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
101517199 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
101517199 (LIG1)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
101517199 (LIG1)
NER (nucleotide excision repair)
Other NER factors
101517199 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
101517199 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DUF1685
Motif
Other DBs
NCBI-GeneID:
101517199
NCBI-ProteinID:
XP_004597257
LinkDB
All DBs
Position
5:2918825..2939409
Genome browser
AA seq
915 aa
AA seq
DB search
MQRSIMSFFSPSKEGQTKKPQKETSGGGREGPPPAKAVRKERRGVVAESDSPVKRPGRKA
AQVLSSEGEEEDEALTPPRGQKPAPESPQGSPPSSTTSPENTPSPVSLPASGIPKRLTAR
KQLPKRKIQDALERQDAEEECCAKRRKEEEEPEIPRERPIKTEVTEKDTEEGEQPMAPPE
PCVGLTLPLASGEAPADSASRPLVTVKEEPQEGQARPPARAPRTLSSFFAPRKPAVKTEV
KQEESGIVLKQEASGPLDPTTYNPAKNNYHPVEDACWKPGQKVPYLAVARTFEKIEEVSA
RLRMVETLSNLLRSVVALSPPDLLPILYLSLNRLGPPQQGLELGVGDGVLLKAVAQATGR
QLDVVRAEAAEVGDVGLVAENSRITQRFMVPPPPLTAAGVFTKFKEIAQLSGNAATNKKM
DIIRGLFVACRYSEARFIARSLRGRLRLGLAEQSVLTALTQAVSLTPPGQGFPPAVVDAG
KGKSAEARKAWLEEQGMILKQTFCEVPDLDRIVPVLLEHGLEKLPEHCRLSPGTPLKPML
AHPTHDISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISR
IPKIKLPSVTSFILDTEAVAWDREKKQIRPFQVLTTRKRKDVDPSEIQVQVCLYAFDLIY
LNGQSLVREPLSRRRQLLRENFVETEGEFLFATSLDSKDLEQIAEFLEQSVKDSCEGLMV
KTLEVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLACYD
EDTEELHAICKLGTGFSDEELEEQYQHLQALVLPSPRPYVRAGGAAAPDHWLDPITVWEV
KCADLSLSPIYPAARTLVDSEKGISLRFPRFVRVRRDKRPEDATTSAEVAEMYQRQSQIQ
NQLDSDSDSDMDDFF
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatcatgtcatttttctccccctcgaaggaggggcagacgaagaagcca
cagaaggagacatccggcggtggcagagagggaccaccgcctgccaaggcagtgcggaag
gagcgcagaggcgtggtggccgagagcgactctccggtgaagaggcctggccggaaggct
gcccaggtcctgagtagcgaaggagaggaggaggacgaagccctcacgccgccccgaggc
cagaagcctgctccagagtccccacagggctccccacccagctcaaccacatctcctgag
aacaccccctcacctgtgagcctccccgcgtcgggcatcccgaagcgccttacagctcgg
aagcagctcccaaagcggaagatccaggatgccttggaaagacaggatgcagaggaggag
tgctgcgccaagaggaggaaggaggaggaagaaccagagatcccaagagaaagacccatc
aagactgaagtgacagagaaggacacggaggagggggagcagcccatggcccccccggag
ccctgcgttggcctcactctgcctttggcttcaggagaggccccagcggacagcgcctcc
aggcccctggtgactgtgaaggaggagccacaggagggccaggccaggccgccagcccgc
gccccccggacgctcagcagcttcttcgcgccccggaagccggcagtcaaaacagaagtg
aagcaggaggagtcgggcatcgtactgaagcaggaggccagcggacccctggacccaacg
acctacaaccctgccaagaacaactaccaccccgtggaggacgcctgctggaaacctgga
cagaaggtgccttacctggccgtggcccggacgtttgagaagatcgaggaggtctctgct
cggcttcgcatggtggagacgctgagcaacctgctgcgctccgtcgtggccctgtcaccg
ccagacctgctccccatcctctacctcagcctcaaccgcctggggccgccccagcagggc
ctggagctcggtgtgggcgacggcgtcctgctcaaggccgtggcccaggccacaggtcgg
cagctggacgtcgtgcgggctgaagcagccgaggtgggcgacgtggggctggtggcagag
aacagccgcatcactcagcgattcatggtgccaccacctcctctcaccgctgccggggtc
ttcaccaaattcaaggagattgcccagctcagtggcaacgctgccaccaacaagaagatg
gacatcatcagaggcctctttgtcgcctgccgctactcggaagcccgattcatcgccagg
tccctgagggggcggctgcgcctcgggctggcagagcagtcggtactgaccgccctcacc
caggctgtgagcctcacgccccctggccaagggttccccccagctgtggtggatgctggg
aagggcaagtcggctgaggcccggaaggcgtggctggaggagcagggcatgatcctgaag
cagacgttctgcgaggtgccggaccttgaccggatcgtgccagtgctgttggagcacggc
ctggagaagctcccggagcattgcaggctgagcccaggcactcccctgaagcccatgctg
gcccatcccacccacgacatcagcgaggtcctgaaacgctttgaggaggcagctttcacc
tgcgagtacaaatacgacgggcagagggcacagatccacgccctggaagggggggaggtg
aagatcttcagcaggaatcaggaggacaacactgggaagtaccccgacatcatcagccgt
atccccaagattaaactcccgtcagtcacgtccttcatcctggacacagaggctgtggcc
tgggaccgcgagaagaagcagatccggccattccaggtgctcaccacccgcaagcgcaag
gatgtggacccatctgagatccaggtgcaggtgtgtttgtacgccttcgacctcatctac
ctcaatggacagtccctggtgcgtgagcccctgtcccgccgccggcagctgctccgtgag
aactttgtggagaccgagggtgagtttctcttcgccacctccctggacagcaaggacctg
gagcagatcgccgagttcttggagcagtctgtgaaggactcctgtgaggggctcatggtg
aagaccctggaggtggatgccacctacgaaattgccaagagatcgcacaactggctcaag
ctgaagaaggactacctggatggtgtaggcgacaccctggacctcgtggtgattggtgcc
tacctgggccgggggaagcgcgccggccgctatgggggcttcctgctggcctgctacgac
gaggacactgaggagctgcacgccatctgcaagctgggcacgggcttcagcgatgaggag
ctggaagagcagtaccagcacctgcaggccctggtgctgcccagcccacggccctacgtg
cgggcaggcggtgctgcggcccccgaccactggctggatccgatcaccgtgtgggaggtg
aagtgcgcagacctctccctgtcccccatctaccccgctgcccgcaccctggtggacagt
gagaagggcatctccctccgcttccctcggttcgttcgtgtccgcagagacaagaggccg
gaggatgccaccaccagtgccgaggtggccgagatgtaccagaggcagagtcagatccag
aaccagctggactcggactcagactccgacatggacgatttcttctga
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