Ochotona princeps (American pika): 101521752
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Entry
101521752 CDS
T07609
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03013
Nucleocytoplasmic transport
opi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101521752 (UPF1)
03015 mRNA surveillance pathway
101521752 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101521752 (UPF1)
Enzymes [BR:
opi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101521752 (UPF1)
5.6.2.5 RNA 5'-3' helicase
101521752 (UPF1)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101521752 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
101521752 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101521752
NCBI-ProteinID:
XP_004595830
LinkDB
All DBs
Position
Unknown
AA seq
1111 aa
AA seq
DB search
MFILRPSSVEADVVFLCWAAGAVGLKPAGVGVPRGPSLAWGGFAGEEGGGGPARGVCSGA
ASPAERAPPQVGPEGVLHNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCG
IHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCG
CRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPS
EQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFG
PLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYK
GDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSAL
KTFAVDETSVSGYIYHKLLGHEVEDVIVKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPL
SLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAK
SREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELL
MNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLG
PVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTA
ADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKP
DQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEH
QGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLR
ESLMQFSKPRKLVNTINPGARFMSTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIG
MISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKVGRGGRQKNRFGL
PGPSQPTLPSSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEF
KSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgttcatcctgcgcccctctagtgtggaggcggatgtggtgttcctgtgctgggctgct
ggagctgtaggtctgaaacctgctggggtgggcgtccctcgagggccgtccctggcctgg
ggtgggtttgctggggaggagggtggtggagggccagcccgcggggtgtgcagcggcgcg
gcctccccggctgagcgtgcccctccgcaggtcggccctgagggcgtcttgcacaatggc
gctgtggacgacagcgtggccaagaccagccagctgctggccgagctcaacttcgaggag
gacgaggaggacacgtactacaccaaggacctgcccgtgcatgcctgcagttactgcggc
atccatgacccggcctgcgtggtttactgcaacaccagcaagaagtggttctgcaacggc
cgcgggaacacctccggcagccacatcgtgaaccacctggtgcgggccaagtgtaaggag
gtgaccctgcacaaggacgggccgctcggtgagacggtgctcgagtgctacaactgcggc
tgccgcaacgtcttcctgctgggcttcatcccggccaaggctgactcggtggtggtgctg
ctgtgccggcagccgtgcgccagccagagcagcctgaaagacatcaactgggacagctcg
cagtggcagcccctcatccaggaccgctgcttcctgtcctggctcgtcaagatcccctcg
gagcaggagcagctgcgggcgcgccagatcacggcacagcagatcaacaagctggaggag
ctgtggaaggagaacccctcggccaccttggaggacctggagaagccgggtgtggatgag
gagccgcagcacgtgctgctgcgctacgaggatgcctaccagtaccagaacatcttcggg
ccgctcgtcaagctggaggccgactacgacaagaagctgaaggagtcccagacgcaggac
aacatcacggtgaggtgggacctgggcctcaacaagaagcggatcgcctacttcaccctg
cccaagaccgactccgacatgcggctcatgcagggcgacgagatctgcctgcgctacaaa
ggcgacctggcgcccctctggaagggcatcggccacgtcatcaaggtccctgacaattac
ggcgacgagatcgccatcgagctgcgcagcagcgtgggcgcgcccgtggaggtgacgcac
aacttccaggtggacttcgtgtggaagtccacttccttcgacaggatgcagagcgcgctg
aagacgttcgcggtggacgagacgtccgtgtcgggctacatctaccacaagctgctgggc
cacgaggtggaggacgtgatcgtgaagtgccagctgcccaagcgcttcacggcgcagggc
ctcccggacctcaaccactcgcaggtgtacgccgtgaagacggtgctgcagcggccgctc
agcctcatccagggcccgcccggcaccggcaagacggtcacgtcggccaccatcgtctac
cacctggcccgccagggcaacgggcccgtgctggtgtgtgccccgagcaacatcgccgtg
gaccagctgacagagaagatccaccagacgggcctcaaggtggtgcgcctgtgcgccaag
agccgcgaggccatcgactcgcccgtgtccttcctggcgctgcacaaccagatcaggaac
atggacagcatgcccgagctgcagaagctgcagcagctgaaggacgagaccggggagctg
tcgtcggccgacgagaagcgctaccgcgccctcaagcgcacggccgagcgggagctgctc
atgaatgctgacgtcatctgctgcacctgcgtgggcgccggcgacccccggctggccaag
atgcagttccgctccatcctgattgacgagagcacgcaggccacggagcccgagtgcatg
gtgcccgtggtgctcggtgccaagcagctgatcctcgtgggcgaccactgccagctgggc
ccggtggtgatgtgcaagaaggcggccaaggccgggctctcccagtccctgttcgagcgc
ctggtggtgctgggcatccggcccatccgcctgcaggtgcagtaccggatgcaccccgcg
ctcagtgccttcccgtccaacatcttctacgagggctcgctgcagaacggcgtcaccgca
gctgaccgtgtgaagaagggctttgacttccagtggccacaaccggacaagcccatgttc
ttctacgtgacccagggccaggaggagatcgccagctccggcacctcctatctcaacagg
acggaggcggccaacgtggagaagatcaccacgaagttgctgaaggcgggcgccaagccg
gaccagattggcatcatcacgccctacgagggccagcgctcctacctggtgcagtacatg
cagttcagtggctcgctgcacaccaagctctaccaggaggtggagatcgcgagcgtggac
gccttccagggtcgtgagaaggacttcatcatcctgtcgtgcgtgcgcgccaacgagcac
cagggcattggcttcctcaacgacccgcggcgcctcaacgtggccctgacgagagccagg
tatggcgtgatcatcgtgggcaacccgaaggcgctgtcgaagcagccgctgtggaaccac
ctgctcaactactacaaggagcagaaggtgctggtggaggggccgctcaacaacctgcgt
gagagcctcatgcagttcagcaagccgcgcaagctggtcaacaccatcaacccgggcgcc
cgcttcatgagcacggccatgtatgacgcccgcgaagccatcatccccggctccgtgtat
gaccgcagcagccagggccggccctccaacatgtacttccagacccacgaccagatcggc
atgatcagcgcggggcccagccacgtggccgccatgaacatccccatccccttcaacctg
gtcatgccgcccatgccgccgccgggctacttcgggcaggccaacgggccggctgcaggc
cggggcacccccaaaggcaaggtcggccgtgggggacgccagaagaaccgctttgggctg
ccggggcccagccagcccaccctgcccagcagccaggcgagccaggatgtggcatcgcag
cccttctcgcagggcgccctcacgcagggctacatctccatgagccagccctcccagatg
agccagcccggcctctcgcagccggagctgtcccaggacagttacctcggtgacgaattt
aaatctcagatcgatgtggcgctgtcgcaagactccacctaccagggggagcgggcctac
cagcatggcggggtgacggggctgtcccagtactag
DBGET
integrated database retrieval system
