Ochotona princeps (American pika): 101522013
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Entry
101522013 CDS
T07609
Symbol
UPF3A
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03013
Nucleocytoplasmic transport
opi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101522013 (UPF3A)
03015 mRNA surveillance pathway
101522013 (UPF3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101522013 (UPF3A)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101522013 (UPF3A)
mRNA cycle factors
P-body specific factors
101522013 (UPF3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
101522013
NCBI-ProteinID:
XP_036349298
LinkDB
All DBs
Position
8:74829020..74849789
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AA seq
297 aa
AA seq
DB search
MEVQFRRELGTPPAPSSGGGSGKPREEKRTALSKVVVRRLPPGLTKRQLEEQLRPLPAHD
YFELFPADLSLYPHLYSRAYINFRDPDDVLLFRDRFDGFIFTDNKGLEYPAVVEFAPFQK
VAKKKLKKKDAKTGSIEDDPEYKKFLETYSVEEEKTSASPEILLGELEARARELTARRTT
PLLEYIKSRKLEKQRIREEKREERRRRELEKKRLREEEKKKRREEERCKKKETDKQKKIT
EKDVRIKDQPAVQLHQPGTRLRVHECGRRPSKEGCGGISREAEDSAGAAPEKNEEAE
NT seq
894 nt
NT seq
+upstream
nt +downstream
nt
atggaggttcagttccgacgagagctcgggacgccgccggccccgtcctccggtggcggg
agcggcaaacctcgcgaggagaagcggacagccctgagcaaggtggtcgtccggcggctc
ccgcccggcctcaccaagcggcagctggaggagcagctgcgtccgctgcccgcacatgac
tacttcgagctcttccccgcggacctcagtctttaccctcacctctactcgagagcgtac
atcaacttcagggatccagatgacgtccttctcttcagagatcgttttgatggatttatc
ttcactgacaacaaaggcctggagtacccggctgtggttgagtttgctccattccagaag
gtggccaagaagaagctgaagaagaaagatgccaagacgggaagcatcgaagatgatcct
gaatacaagaagtttttagaaacttactctgtagaagaggaaaaaaccagtgccagccca
gaaatcctgctgggagagctggaggcaagggcaagggagctcacagctagaagaaccaca
cctcttttggaatatattaaaagcagaaagttggaaaaacagagaattcgagaggagaag
cgagaagaacgaaggagaagggagttagagaagaaacgcttgcgggaagaagagaaaaag
aaaaggagagaagaagaaagatgcaaaaaaaaagagacagataagcaaaagaaaatcacg
gagaaagatgtaaggattaaggaccagccagctgtgcagctgcatcagccaggaactcgc
ctgcgagtccatgagtgtggccgaagaccctccaaggagggctgtggtgggattagcagg
gaggcagaagactcagcaggggctgctcccgagaagaatgaagaggcagagtga
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