Ochotona princeps (American pika): 101529246
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Entry
101529246 CDS
T07609
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
101529246 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
opi03400
]
101529246 (LIG4)
Enzymes [BR:
opi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101529246 (LIG4)
DNA repair and recombination proteins [BR:
opi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
101529246 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
101529246
NCBI-ProteinID:
XP_004577414
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All DBs
Position
8:complement(72103792..72106527)
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AA seq
911 aa
AA seq
DB search
MAASHTSQTVASHVPFADLCSTLERIQRSKGRAEKIRHFSEFLASWRKFHDALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPREGRDALKLLNYRAPTAAHG
DAGDFAMTAYFVLKPRCSQKGSLSVQQVNELLDSVASSNAARRKDLIKKSLLQLIVQSSA
LEQKWLIRMIVKDLKLGVSQQTILNAFHTDAVELHNVTTDLERVCRQLHDPSVGLTDISI
TLFSAFKPMLAAVADVERIEKDMKQQSFYIETKLDGERMQMHKDGDEYRYFSRNGYNYTE
QFGASPQEGSLSPFVHSAFRADAQVCILDGEMMAYSPHTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNNKKLGRETLRNRYEILSSLFTPIPGRIEIVHKALAHTKNEVIDALNE
AIDKREEGIMIKHPLSIYKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGLRGGMM
SHFLCAVAEKPPPGEKPSVFHTLCRVGSGYTMKELYDLGLKLNKCWKPFHRKAPPGSILC
GTEKPEVYIEPCNSVIVQVKAAEIVPSSMYKTGCTLRFPRIEKIRDDKEWHECMTLDDLE
QLRGKALGKLATRHLCVGADDEPQEKKRKSAPKIKKVIGIIEHLKAPNLSNVNKVSSVFE
DVEFCVMSGTDSHPKPDLENRIAELGGCITQNPGPDTYCVIAGTENIRVKNIISSNKHDV
VKPAWLLECCRTKSCVPWQPRFMIHMCPSTKEHFAREYDRYGDSYFVDTDLNQLKEVFSG
MKNSHEQTPEEMASVIAELECRYSWDQSPLSLFRHHTVYLDLYTVINDLSTKIEGTRLAT
KALELRFHGARVVSCLAEGVSHVIIGEDRSRVPDFKAFRRTLKRKFKILQEGWVTDSVCK
SELQEENQYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcacacacttcacaaactgttgcgtctcacgttcctttcgcagatttatgt
tcaactttagaacgaatacagaggagtaaaggacgtgcagagaaaatcagacattttagt
gagtttttagcttcttggaggaaatttcatgatgcccttcacaagaaccaaaaagacgtc
acagactcattttatcctgccatgagactcatccttcctcagcttgaaagagagagaatg
gcctatggcataaaggaaacgatgcttgccaagctttatatagagttactcaacctacct
agagaggggagagacgccctgaagctgttgaactacagagcgcccactgcagcacacggc
gatgcgggggacttcgccatgaccgcgtactttgtgttgaagcctagatgttcccagaag
ggaagcctaagtgtgcagcaggtcaacgagcttctggactcggttgccagcagtaacgct
gcgagaaggaaagacctcatcaagaagagtcttctccagctgatagtgcagagctccgca
ctggagcagaagtggctcatccgcatgatcgtcaaggacttaaagctcggtgtcagtcag
caaacgatattgaacgcttttcacaccgatgctgtggagttgcataacgtcaccacggac
ctggagagggtctgtaggcaactgcatgatccttcggtgggactcactgatatctccatc
actctgttctctgcctttaaacccatgttagccgctgtcgccgacgtggagcgcattgag
aaggacatgaagcagcagagcttctacattgagaccaagctggacggcgagcgcatgcag
atgcacaaggatggggatgagtaccggtacttctcccgcaacggctacaactacacggag
cagtttggcgcctccccgcaggaaggctccctcagccccttcgtccacagtgccttcaga
gcagacgcacaggtgtgtatcctggatggcgagatgatggcctacagcccgcacacgcag
acttttatgcaaaaggggaacaagtttgacattaaacgaatggtagaagattctgatctg
cagacatgttactgtgtgtttgatgtcttgatggttaacaataaaaagcttggacgggag
accctgagaaacaggtatgagattcttagtagtctttttacaccaataccaggtagaata
gaaatcgtgcacaaagcgctagctcataccaagaatgaagtgattgatgcattgaacgaa
gccatagataagagagaagagggaatcatgataaaacatccgctgtccatttacaaaccg
gacaagaggggtgaaggatggctgaaaattaagccagagtatgtcagcggcctgatggac
gagctggacatcctgatagtcgggggctactgggggaagggcttgcgtggtggaatgatg
tctcattttctgtgtgcagtcgcagagaagccccctcctggtgaaaagccatctgtgttt
cacactctgtgtcgtgttggctcaggatacaccatgaaagaactctatgatctgggtttg
aagttgaacaaatgctggaagccattccacaggaaagctcctccaggtagtattttatgt
ggaacagagaagccagaagtgtacattgagccttgtaattctgtgattgtccaagttaaa
gcagctgagattgtccccagcagtatgtataaaactggatgcaccctacgttttccacgg
attgaaaagatcagagatgacaaagaatggcacgagtgcatgactctggatgacttagaa
caacttcgggggaaggcgttggggaagctcgccaccaggcacctctgtgtaggtgctgat
gacgagccccaagagaaaaagcggaaatcggcccccaaaataaagaaagttattggaatt
attgaacatttaaaagcaccgaacctttctaatgtaaacaaagtctctagcgtatttgag
gatgtcgagttttgtgtcatgagtggaacagacagccacccgaaacctgacctagagaac
agaattgcagaattgggtggttgtataacacagaacccaggcccagacacgtactgtgta
attgcagggactgagaacatcagggtgaaaaacatcatttcttcaaataagcatgatgtt
gtcaagcctgcgtggctcctggagtgttgcaggaccaaaagctgtgtgccttggcagcca
cgcttcatgatccacatgtgtccatcaactaaagaacattttgcccgtgagtatgatcgc
tatggagacagttattttgttgacacagatttgaaccaactgaaggaagtattttcagga
atgaagaattctcatgagcagactcctgaagaaatggcttccgtgattgctgagttagaa
tgtcgctattcctgggaccagtctcctctcagtctgttccgacaccatactgtttatttg
gacttgtatactgttattaatgacctgagcaccaaaattgagggaacgagattagctacg
aaggccttggagcttcgattccatggagccagagtggtttcttgtttagctgagggagtg
tctcatgtcatcattggggaggatcgtagccgagttccagattttaaagcttttagaaga
actcttaagaggaagtttaagatcctgcaagaaggttgggtgaccgattcagtatgcaag
tctgaactgcaagaagaaaatcagtatttgctttaa
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