Ochotona princeps (American pika): 101531293
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Entry
101531293 CDS
T07609
Symbol
CHD5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
opi03036
]
101531293 (CHD5)
Chromosome and associated proteins [BR:
opi03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
101531293 (CHD5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
ResIII
HDA2-3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101531293
NCBI-ProteinID:
XP_004596196
LinkDB
All DBs
Position
13:19562189..19614641
Genome browser
AA seq
1861 aa
AA seq
DB search
MPRASVESRGVTPRSLTLAEEEDGGLDGFEDFFPAEPLSLPKKKKSKKPKENRSKGKRKK
KEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKVKDKKEKKAKRRRKEEEEEENDDGC
LKEPKSSGQLMAEWGLDDVDYLFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTV
LGAKWREFSANNPFKGSSAAAAAAAVAAAVETVAIAPPLAVSPQQVPQPVPIRKAKTKEG
KGPGVRRKAKGSKDTKKKGKGKKAAGLKFRFGGMGTKRKKGSSSEEDEREESDFDSASIH
SSSVRSECSAALGKKSKRRRKKKTIDDGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHL
VCLDPELEKAPEGKWSCPHCEKEGIQWEPKEDEDEEEDGGCEEEEDDHMEFCRVCKDGGE
LLCCDACPSSYHLHCLNPPLPEIPNGEWLCPRCTCPPLKGKVQRILHWRWTEPPAPFMVG
LPGPELEPGVPRPKPLEGIPEREFFVKWAGLSYWHCSWVKELQLELYHTVMYRNYQRKND
MEEPPPFDYGSGEEDSKSDKRKGKDPTYAKMEERFYRYGVKPEWMMVHRILNHSFDTKGD
VRYLIKWKDLPYDQCTWEIDDIDIPYYDNLKQTYWGHRELMLGEDMRLPKRLVKKGKKLK
DDKQEKPPDTPEVDPTVKFDKQPWYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEM
GLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLSTIINWEREFEMWAPDFYVVTYTGDKESR
SVIRENEFSFEDNAIRSGKKVFRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVD
EAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEE
FADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRN
FEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVKSSGKLM
LLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFN
APGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYR
FVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEG
MMSQGQRPATPVPEVQSSKGGALAAGAKKKHGSTPPGDNKDVEDSSVIHYDDAAISKLLD
RNQDATDDTELQNMNEYLSSFKVAQYVVREEDGVEEVEREVIKQEENVDPDYWEKLLRHH
YEQQQEDLARNLGKGKRIRKQVNYNDASQEDQEWQDELSDNQSEYSIGSEDEDEDFEERP
EGQGGRRQSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAF
NSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVM
SLVRKKVQEFEHVNGQYSTPDLVPEGPESKKPNEVVSDPNTPVPASPAHLPPVSLGLPDK
VDAQPGYMDEKELGTQEPKKALETQVLPTALESEDSKERAWEERPEETDKAQPSPEQLPK
ELHTLWQNEERAAVSSGKLYDIWHRRHDYWLLAGIVTHGYARWQDIQNDPRYTILNEPFK
SEVHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPNHPAMALNARLAEVE
CLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPSMLSRIPPVAARLQ
MSERSILSRLTNRAGDPTMQQGAFGSSQMYNSNFGSNFRGPGPGGIVNYNQMPLGPYVTD
I
NT seq
5586 nt
NT seq
+upstream
nt +downstream
nt
atgccccgggcctccgtggagagcagaggagtaaccccgcgctccctgactcttgcagag
gaagaagatgggggcctggacggcttcgaggatttcttccctgccgagcccctgagcctt
cccaagaagaagaaatccaagaagcccaaggagaacagatccaagggaaaacggaagaag
aaggaggggagcaatgatgagctgtcggaaaacgaggaggatctggaagagaagtcggag
agcgaaggcagcgactactcccccaataaaaagaaaaagaagaaagtcaaggacaagaag
gagaaaaaagccaagcggagacggaaggaggaggaggaggaggagaacgacgacggatgc
ctaaaggagcccaagtcctcggggcagctcatggctgagtggggcctggatgacgtggac
tacctgttctcagaggaggactaccacacgctgaccaactacaaggccttcagccagttc
ctccggccgctcattgccaagaagaaccccaaaatccccatgtccaagatgatgactgtg
ctgggcgccaagtggcgtgagttcagtgctaacaaccccttcaagggcagctctgcggcg
gcagcggcggcggctgtggcggcggctgtggagacggttgcgattgcccctccgctggct
gtcagcccccagcaggtgccccagcctgtgcccatccgcaaagccaagaccaaggagggc
aaggggcccggggtgaggaggaaggccaaaggctccaaagacacgaagaagaaaggcaag
ggcaagaaggcggccgggctcaagttccgcttcggagggatgggcaccaagaggaagaag
ggctcctcgagtgaggaggacgaacgggaggagtcggactttgacagcgccagcatccac
agctcctccgtgcgctccgagtgctctgcggccctgggcaagaagagcaagagacggcgc
aagaagaagacgattgatgatggcgatggctacgagacggaccaccaggactactgcgag
gtgtgccagcagggaggggagatcatcctgtgtgacacctgcccccgggcctaccacctg
gtctgcctggacccagagctggagaaggctcccgagggcaagtggagctgcccacactgt
gagaaggagggaatccagtgggagcccaaggaggacgaggacgaggaggaggatggcggc
tgcgaggaggaggaggacgaccatatggaattctgccgcgtgtgcaaggacggtggggag
ctgctgtgctgcgacgcctgcccctcgtcctaccacctgcactgcctcaacccgccgctg
cctgagatcccaaacggtgaatggctctgcccgcgctgtacttgtccccctctgaagggc
aaggtgcagcggatcctgcactggaggtggacggagccgccagcccccttcatggtgggc
ctgccaggcccggagctggagccgggtgtgccccggcccaagcctctggagggcatcccg
gagagagagttctttgtcaagtgggctgggctctcctactggcactgctcctgggtgaag
gagctgcagctggaactgtaccacaccgtgatgtaccgcaactaccaaaggaagaatgac
atggaagagccgccgcccttcgactacggctccggggaggaggacagcaagagcgacaag
aggaagggcaaggaccccacctacgccaagatggaggagcgcttctaccgctacggggtc
aagcccgagtggatgatggtacaccgcatcctgaaccacagcttcgacacaaagggcgac
gtgcgctacctgatcaaatggaaggacctgccctatgaccagtgcacctgggagattgac
gacattgacatcccatactacgacaacctcaagcagacctactggggccacagggagctg
atgctgggggaagacatgaggctgcccaagaggctggtgaagaagggcaagaagctgaag
gacgataaacaggagaagccgccagacacacctgaggtggatcccacggtcaagttcgat
aagcagccgtggtacatcgactccacgggtggcaccttgcatccgtaccagctggagggc
ctgaactggctgcgcttctcgtgggctcagggcaccgacaccatcctggctgacgagatg
gggctgggcaagacggtgcagaccatcgtattcctgtactccctgtacaaggagggccac
tccaaggggccgtacctggtcagcgctccactgtccactatcatcaactgggagcgtgag
tttgagatgtgggcacccgacttctatgtggtcacctacacgggggacaaggagagccgc
tccgtgatccgcgagaacgagttctccttcgaggacaacgccattcgcagtgggaagaag
gtgttccgcatgaagaaagaggtgcagatcaagttccacgtcctgctcacctcctacgag
ctcatcaccattgaccaggccatcctgggctccattgagtgggcctgcctcgtggtggac
gaagcccaccggctcaagaacaaccagtccaagttcttcagggtcttaaacagctacaag
attgattacaagctactgctgacgggaaccccactgcagaacaacctggaggagctcttc
cacctcctcaacttcctgacaccagagaggtttaacaacctggagggcttcctggaggag
tttgctgacatctccaaggaggaccagatcaagaagctgcatgacctgctagggccccac
atgctccggcggctcaaggctgatgtcttcaagaacatgccggccaagaccgagctgatc
gtgcgtgtggagctgagccagatgcagaagaagtactacaagttcatccttacacgcaac
ttcgaggcactcaactcgaaaggcggtggcaaccaggtgtcgctgctcaacatcatgatg
gacctgaagaaatgctgcaaccacccctacctcttccctgtggctgccgtggaggcccct
gttctgcccaacggctcctatgacggaagctccctggtcaagtcctccgggaagctcatg
ctgctgcagaagatgctgaagaagctgcgcgatgagggccaccgtgtgctcatcttctcc
cagatgaccaagatgctggacctgctcgaggacttcctggagtacgagggctacaagtat
gagcgcattgatggcggcatcacggggggcctgcggcaggaggccatcgaccgcttcaac
gcccccggcgcccagcagttctgcttcctcctgtccacccgtgcgggcggcttgggcatc
aacctggccacagctgacacggtcatcatctatgactcggactggaacccacacaatgac
atccaggccttcagccgtgcccaccgcatcgggcaaaacaagaaggtgatgatctaccgc
tttgtgacgcgggcctctgtggaggagcgcatcacgcaggtggccaaacgcaagatgatg
ctcacgcacctggtggtgcggcccggcctcggctccaagtcgggctccatgaccaaacag
gagctggacgacatcctcaagttcggcaccgaggagctcttcaaggacgacgtggagggt
atgatgtctcagggccagaggcctgccacacccgtccctgaggtccagtcctccaaaggg
ggggccctggccgcaggtgctaagaagaaacatggcagtacccccccaggtgacaacaag
gacgtggaggacagcagtgtgatccactatgacgacgcggccatctccaagctgctggac
cgcaaccaggacgccactgatgacacggagctacagaacatgaacgagtacctgagctcc
ttcaaggtggcccagtatgtcgtacgtgaggaggacggagtggaggaggtggagcgggag
gtcatcaagcaggaggagaacgtggaccccgactactgggagaagctgctgcggcaccac
tacgagcagcagcaggaggacctggcacgcaacctgggcaagggcaagcggattcgcaag
caggtcaactacaacgacgcctcccaggaggaccaggagtggcaggatgagctctcagac
aaccagtcggagtattccatcggctccgaggacgaggacgaggacttcgaggagaggccc
gaggggcagggtggccgacgacagtccaggaggcagctgaagagcgacagggacaaacct
ctgccccctctgctggctcgagttggcggcaacattgaggtgctgggcttcaacgcccgg
cagcgcaaggcctttctgaatgccatcatgcgctggggcatgcccccacaggacgccttc
aactcccactggctggtgcgggacctgcggggcaagagtgagaaggagttcagagcctat
gtgtccctcttcatgcggcacctgtgtgagccgggggcggacggcgcagagaccttcgcg
gacggcgtgccccgggaaggcctgtccaggcagcacgtgctcacgcgcatcggggtcatg
tcattagttaggaagaaggtccaggagttcgagcacgtgaacggacagtacagcactcct
gacctggtccctgaagggcccgagagcaagaagccaaatgaggtcgtctctgaccccaac
acgccagtgcccgccagccccgcccacctgccgccagtctcactcggcctgccagacaaa
gtggatgcccagccagggtacatggacgagaaggagctggggacacaggagccaaagaag
gccctggaaacccaggtgctgccgactgccctggagagcgaggacagcaaggagagagcc
tgggaggagcggccggaggagacagacaaggcccagccctccccggagcagctgccaaaa
gagctgcacacgctgtggcagaatgaagaacgagctgccgtgtcctcgggcaagctctac
gacatctggcaccggcgccatgactactggctactggcgggcattgtcacgcacggctac
gcccgctggcaggacatccagaatgacccacgctacacaatcctcaacgagcccttcaag
tcagaggtccacaagggcaactacctggagatgaaaaacaagttcctggcccgcaggttc
aagctgttggagcaggccctggtcatcgaggagcaactccgcagggccgcgtacctcaac
atgacccaggaccccaaccacccagccatggccctcaacgcccgcctggccgaggtggag
tgccttgctgagagccaccagcacctgtccaaggagtccctggccgggaacaagcctgcc
aacgccgtcctgcacaaggtcttgaaccagctggaggagctgctgagcgacatgaaggcc
gatgtgacgcgcctgccctccatgctgtcccgcatccccccggtggccgcccgcctccag
atgtctgagcggagtatcctcagccgcctgaccaatcgcgctggcgaccccaccatgcag
cagggcgctttcggctcctcccagatgtacaacagcaactttgggtccaatttccggggc
cctggaccgggagggattgtcaactacaaccagatgcccctggggccctatgtgactgat
atctag
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integrated database retrieval system
