Ochotona princeps (American pika): 101532620
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Entry
101532620 CDS
T07609
Symbol
TRIM56
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
opi04121
]
101532620 (TRIM56)
Enzymes [BR:
opi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101532620 (TRIM56)
Ubiquitin system [BR:
opi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
101532620 (TRIM56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
zf-C3HC4_3
zf-RING_2
zf-C3HC4_4
zf-RING_5
MNR
Phytase-like
Motif
Other DBs
NCBI-GeneID:
101532620
NCBI-ProteinID:
XP_036348882
LinkDB
All DBs
Position
6:25335038..25337335
Genome browser
AA seq
748 aa
AA seq
DB search
MVSQGSAPSLLEALSSDFLACKICLEQLQVPKTLPCLHTYCQQCLAQLADSGHIRCPECR
ETVPVPPAGVAAFKTNFFVNGLLDLVKARGDLHAGKPACALCPLVGGTSTGGPATARCLD
CADDLCQACADGHRCTRQTHSHRVVDLVGYRAGWYDEEARERQAAQCPQHPGEALRFLCQ
PCSQLLCRECRLDPHLDHPCLPLAEAVRARRPGLEELLAGVDRNLAELEVARTAEKDALA
RLREQAARVGLQVEEAAEGVLRALLSQKQEVLGQLRAHVEAAEEASWERLAELEGREQVA
KAAAAFARRVLSLGREAEILSLEGAIAQRLRHLQDRPWTYGPVLCLLPRLDLHPGLLDKN
CHLLQLSFEELRPREEDDRERAGAASATATQGVGEAPESQGQEDGAAQAPKEGAAQVSQP
QKPQVTPKEDRTPSPQEDRGAPAERGAKANKKRKFKGRLKSISREPSPAPGPNLEGSGLL
PRPVFFCSFPTRMPGDRRSPRITGLCPFGQREILVADEQNRALKRFSLNGDYKGAVPVPE
GCSPCSVATLQQGAVAFSAGARLYLINSEGEVQWRRALSHSQASHAVAALPSGDRVAVSV
AGHVEVYNMEGSLATRFIPGGRASRGQRALVFLTASPQGNFVGSDWQQNSVVVCDGLGQV
LGEYRGPGLHGCQPGSLTVDKKGYIFLTLREINKVVILDPKGSLLGDFLTAYHGLEKPRV
TTMVDGRYLVVSLSNGTIHVFRIRATDS
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggtctcccagggctccgcgccttccctgctggaggccctgagcagtgacttcctggcc
tgcaaaatctgcctggagcagctacaggtgcccaagacactgccctgcctacacacctac
tgccagcagtgcctggcgcagctggctgacagtggccacattcgttgccctgagtgccgc
gagaccgtgcctgtgccgcccgctggcgtggcagccttcaagaccaatttctttgtcaat
gggctcctggacctggtgaaggccaggggagacctgcatgcggggaagcctgcctgtgcc
ctctgtcccctggtggggggcaccagcactgggggcccggccacagcccggtgccttgac
tgcgccgacgacctgtgccaggcctgtgccgatggccaccgctgcacccgccagacccac
tcgcaccgtgtggtggacctggtgggctacagggcaggctggtatgatgaggaggcccgg
gagcgccaggctgcacagtgcccccagcatcctggggaggcgctgcgcttcctgtgccag
ccctgctcccagctgctgtgccgcgagtgccggctagacccccacctggaccacccctgc
ctgcccctggccgaggcggtgcgagcccgcaggccgggcctggaggagctgctagcaggt
gtggacagaaacctggcagagctggaggttgcccgcactgcagagaaggacgcactggcc
cggctgcgggagcaggctgccagagtggggctgcaggtggaggaggcggctgagggagtc
ctgagggccctcctgtcccagaagcaggaggtgctggggcagctgcgggcccatgtggag
gcggcagaagaggcttcctgggagaggctggcagagcttgagggccgggagcaggtggcc
aaggcagctgctgcctttgcccgccgggtgctcagcctgggccgcgaggccgaaattctg
tctttggaaggggctattgcccagcggctccggcacctacaggatcgtccctggacctac
gggccagtcctgtgcctgctgccccggctggacctccaccctgggctcctggacaagaac
tgccacctacttcaactctcctttgaggagctgaggcccagggaggaagacgacagagag
agagcaggtgctgccagcgccactgccacccagggagtgggtgaagcccccgagagtcag
ggccaggaagacggggctgcccaggctcccaaagaaggcgcagcccaggtgtcgcagccc
cagaaaccccaggtgactcccaaggaggacagaaccccatctccgcaagaagacagggga
gccccggcagagaggggcgccaaggccaacaagaagaggaagtttaagggcaggctcaag
tccatttcccgtgagcccagccccgctccgggccctaacctggaaggctctggcctcctg
cccaggcccgtcttcttctgcagcttccccacgcgcatgcctggagataggcggtcacct
cggatcactggcctctgcccctttggccagcgggagatcctggtggccgatgagcagaac
agagcactcaagcgcttctccctcaatggtgactacaagggggccgtgcctgtgcctgag
ggctgctccccgtgcagcgtggctacccttcagcagggggctgtggccttctcagccggt
gcgcggctctatctcatcaactccgagggcgaggtgcagtggcgccgggcgctgagccat
tcccaggccagccacgctgtggctgcgctgcccagcggggaccgggtggcggtcagcgtt
gcgggccatgtggaagtgtacaacatggagggcagcctggccacccggttcatccctggt
ggcagggccagccgcggccagcgagcacttgtgttcctgactgctagcccccagggcaat
ttcgtgggatccgattggcagcaaaacagtgtggtggtgtgcgacgggctgggccaagtg
ctcggggagtaccgggggccaggcttgcacggctgccagccggggtccctgaccgtggac
aagaagggctacatcttcctgaccctgcgggagatcaacaaggtggtgatcctggacccc
aagggttcccttcttggggatttcctgacagcctaccatggcctggaaaagccccgcgtg
accaccatggtggacggcaggtacctggtcgtgtcccttagtaatgggaccatccatgtc
tttcggatccgtgccaccgacagttga
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