Ochotona princeps (American pika): 101533209
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Entry
101533209 CDS
T07609
Symbol
CNOT3
Name
(RefSeq) CCR4-NOT transcription complex subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
opi
Ochotona princeps (American pika)
Pathway
opi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
101533209 (CNOT3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
opi03019
]
101533209 (CNOT3)
Messenger RNA biogenesis [BR:
opi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
101533209 (CNOT3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
101533209 (CNOT3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
PI3K_P85_iSH2
Motif
Other DBs
NCBI-GeneID:
101533209
NCBI-ProteinID:
XP_004596992
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Position
5:complement(588784..593888)
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AA seq
740 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVSEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLIDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQDRIEGLKRHIEKHRYHV
RMLETILRMLDNDSILVDAIRKIKDDVEYYVDSSQDPDFEENEFLYDDLDLEDIPQALVA
TSPPSHSHMEDEIFNQSSSTPTSTTSSSPIPPSPANCTTENSEDDKKRGRSTDSEVSQSP
AKNGSKPVHSAQQPQPPAVPPAYSGPPPAAPGNNGVPTPAAPASTLGPKASPAPSHNAGT
PAPYAQAVAPSAPSGPSSSQPRPPSVQPSGGAGAGSAGSGGSTGGGAGKQNGATSYSSVV
ADSPAEAALGSSGGSSASSQALGAPSGPHNPPPSASKEPSAAAPAGAGGVAPGSGNTSGG
PSLLVPLSVNPPSSPTPSFSEAKAPGALLNGPPQFTAAPEIKAPEPLSSLKSMAERAALS
SGIEDPVPTLHLTERDILLGSTSAPPASAQPPLQLSEVNIPLSLGVCPLGPVPLSKEQLY
QQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLSTETLFF
IFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWG
QRKKEGFTFEYRYLEDRDLQ
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaagcgcaagctccaaggtgagattgaccgctgcctcaagaaggtgtccgag
ggcgtggagcaatttgaggatatttggcagaagctccacaatgcggccaacgcgaaccag
aaagaaaagtatgaggctgacctaaagaaggagattaagaagctgcaacggctgagggac
cagatcaagacatgggttgcgtccaacgagatcaaggacaagaggcagctcatagacaac
cgcaagctcatcgagacgcaaatggaacggttcaaagttgtggagcgagagaccaaaacc
aaagcttacagcaaggagggcctgggcctggcccagaaggtggaccctgcccagaaggag
aaggaggaggtcggccagtggctcacgaataccattgacaccctaaacatgcaggtggac
cagtttgagagcgaagtggagtcactgtccgtgcagacgcgcaagaagaaaggcgacaag
gataagcaggaccgcatcgagggcctgaagcggcacattgagaagcaccgttaccacgtg
cgcatgctcgagaccatcctgcgcatgctggacaacgactccatcctcgtggacgccatc
cgcaagatcaaggacgacgtggagtactacgtcgactcctcccaggatcccgacttcgag
gagaacgagttcctctacgacgacctggacctcgaggacattccacaggcgctggtcgcc
acctcccccccgagccacagccacatggaggacgagatcttcaaccagtccagcagcacg
cccacctccaccacctccagctcccccatcccccccagcccggccaactgcaccacggag
aactcggaagacgataagaagagggggcgctcgacggacagtgaggtcagccagtctcca
gccaagaatggctccaagcctgtgcacagcgcccagcagccgcagccccccgccgtgccg
cccgcctactctggccccccgcctgctgcccctggcaacaacggggtccctacgccagca
gcaccagccagcaccctggggcccaaggccagtcccgccccaagccacaacgccggtact
cctgccccctatgcccaggccgtggccccctctgcgcccagcgggcccagctcctcccag
ccccggccccccagtgtgcagccgagtgggggcgctggcgcaggcagtgctggcagcggt
ggcagtacagggggcggtgctggcaagcagaacggtgccaccagttacagctcagttgtg
gcggacagccccgcagaggcagctctgggcagcagtgggggcagcagcgccagcagccag
gccctgggggccccttcaggcccccacaaccccccgcccagcgcctcgaaggagcccagt
gcagcagccccagcaggggcagggggcgtggccccaggttcagggaacacctcagggggg
cccagcctgctggtgccactgtccgtgaacccgcctagctccccgacgcccagcttcagc
gaggccaaggctcccggtgctctcctcaacgggcccccccagtttactgccgccccagag
atcaaggcccccgagccactgagctccctcaagtccatggcggagcgagcagccctcagc
tctggcatcgaggaccctgtgccaacgctgcacctcacggagcgagacattctcctgggc
agtacctctgcgcccccggcctcggcgcagccgccgctgcagctctcggaggtgaacatc
ccgctgtcgctgggcgtgtgtcccttggggcccgtgcccctcagcaaggagcagctgtac
cagcaggccatggaggaggccgcctggcaccacatgccacacccctccgactcggagcgc
atccggcagtaccttcccaggaacccctgccccacacccccctaccaccaccagatgcca
cccccgcactcggacacggtggagttctaccagcgcctgtccaccgagacgttgttcttc
atcttctactacctggagggcaccaaggcacagtacctggcagccaaggccctgaagaag
cagtcatggcggttccacaccaagtacatgatgtggttccagaggcatgaggagcccaag
accatcaccgacgagtttgagcagggcacctacatctacttcgactacgagaagtggggc
cagcgcaaaaaggaaggcttcaccttcgagtaccgctacctggaggaccgggacctccag
tga
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