Ochotona princeps (American pika): 101536098
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Entry
101536098 CDS
T07609
Symbol
SCN10A
Name
(RefSeq) sodium channel protein type 10 subunit alpha
KO
K04842
voltage-gated sodium channel type X alpha
Organism
opi
Ochotona princeps (American pika)
Brite
KEGG Orthology (KO) [BR:
opi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
opi04040
]
101536098 (SCN10A)
Ion channels [BR:
opi04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
101536098 (SCN10A)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
Na_trans_cytopl
GPHH
CcmD_alt
Motif
Other DBs
NCBI-GeneID:
101536098
NCBI-ProteinID:
XP_012783306
LinkDB
All DBs
Position
14A:complement(1727628..1800427)
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AA seq
1836 aa
AA seq
DB search
MEFPFGSLETTNFRRFTPASLAEIEKQISAKKAAKKIRDKHRKQKDQEEEKLRPQLDLKA
CNQLPKFYGELPKELIGEPLEDLDPFYSTHRTFMVLNKGRTISRFSATRALWLFSPFNLI
RRMAIKLSVHSWFSLFITVTIVVNCVYMTQSESSDKIETVFTVIYTFEALLKIVARGFCL
NEFTYLRDPWNWLDFSVITLAYVAIAKDLRGISGLRTFRVLRALKTVSVIPGLKVIVGAL
IHSVRKLADVTILTIFCLSVFALVGLQLFKGNLKNKCIKNVSALYEEANYSLDAAENQIK
KSGTNEPLLCGNGSDAGHCPVGSICLKTSQNPDFDYTSFDSFAWAFLSLFRLMTQDSWER
LYQQTLRASGKFYMIFFVLVIFLGSFYLVNLILAVVTMAYEEQNQATMAEIEAKEKKFQE
ALEVLRKEQEVLTALGVDTASLHSHSGSPLASKNANERRHKTKPRVSEGSTDDNKAPQSD
HYNQRRMSFLGLNSGIRRASHGSVYHYRAPGRDASFHDGIPDDGVFHGDQESHRSSLLLS
RDASQQGPLPRSPLTQRPNPGTGHGEDGHLVLPAGEPIPGAPEVSVFDAAQKKAFLSAEY
LDEPFRTQRAMSVVSIMTSVIEAFILPQAVDEVALITSSHKPPPLRVFKLAKSWPTLNTL
IKIIGNSVGALGNLTVILVIIVFIFALVGKQLLGESYIKNWKNISDSGEKLPRWHMHDFF
HSFLVIFRILCGEWIENMWNCMQIGQESVCLVLFLMVMVLGNLVVLNLFIALLLNSFSAD
NLTAPEEDGEVNNLQVALARIQVFGRRARQWLHSFLRRHCLLPRPKAQPQLPVKLPLSNS
KSGNCTAAKSGPGGLSAPRGPNDDLVSGSLVWVSAPIAEGESDLDDLEDDGEQQSQSAPQ
DDIPRGQQEQLQHAGDPGDTPEPRSPGSGMSSADLALYLGEKWDNEATLQAPAEGLDDTS
PSEGSTVDCPDPEEILRKIPELADELEEPEDCFPEACLRHCPCCKVNVAKFPWSVGWQMR
KTCYRIVEHSWFETFIIFMILLSSGALAFEDCYLDKKPTVQALLEYTDRVFTFVFVLEML
LKWVAYGFKKYFTNAWCWLDFLIVAISLTSLTAKILEYSDMAPIKALRTLRALRPLRALS
RFEGMRVVVDALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGRFWKCIDSSNKTFATVP
LSIVENKSECGMQNSSGTYFWVNVKVNFDNVAMGYLALLQVATFKGWMDIMYAAVDSRNI
DCQPKWEENLYMYLYFVVFIIFGGFFTLNLFVGVIIDNFNQQKKKMRGQDIFMTEEQKKY
YNAMKKLGSKKPQKPIPRPLNKYQSFVFDIVTKQAFDVAIMVLICLNMVTMMVETDNQSE
EKTQVLSRINQFFVAVFTAECVLKMFALRHYYFTFGWNVFDFIVVILSIGSQLLSTILHS
VESQSFFSPTLLRVIRLARIGRILRLIRAAKGIRTLLFALMMSLPALFNIGLLLFLVMFI
YSIFGMATFPHVREEAGIDDMFNFKTFANSMLCLFQITTSAGWDGLLSPILNTGPPYCDP
NQPNSSDSGGDCGNPAVGIIFFTTYIIISFLIVVNMYIAVILENFNVATEESTEPLSEDD
FDMFYETWEKFDPQATQFIDYSALSNFADCLSGPLRIPKPNQNILMQMDLPLVPGDKIHC
LDILFAFTKNVLGDSGDLDSLKAGMEEKFMAANLSKASYEPIATTLRWKQEDVSATVIQK
AFRSYIRHRALNLSNVPGVPRADADAGPLPGEGIVVFVTDEDGVLPDKSETASATSFPPS
YDSVTRGLSETVNRSSSSSLQNGDEVTSHDVTAPGP
NT seq
5511 nt
NT seq
+upstream
nt +downstream
nt
atggaattcccctttgggtccctggaaaccaccaacttccgtcggttcactccagcgtcg
ctggcagagattgagaagcaaatcagtgccaagaaggcagcaaagaaaattcgagacaag
cacaggaagcagaaggaccaagaagaagagaagctccggcctcagctagacttgaaggcc
tgtaaccaactgcccaagttctatggcgagctccccaaagagctgatcggggaaccactg
gaggacctggaccccttctacagcacacaccggacatttatggtgctgaacaaaggaaga
accatctcccgcttcagtgccactcgggccctgtggctgttcagccccttcaacctgatc
agaaggatggccatcaaactgtctgtccactcatggttcagcttgtttatcacagtcact
attgtggtcaattgcgtgtacatgacccaaagcgaatcttcggacaaaattgagactgtc
tttactgtcatttacacgtttgaagcattgctcaagattgtggccaggggattttgtctg
aatgagttcacatacctgcgagacccttggaactggcttgactttagtgtcattaccctg
gcatacgtggccatagccaaggacctccgtggtatctctggcctgcggacattcagagtt
ctcagggcactgaaaacagtctctgtgatcccaggactaaaggtcatcgtgggagccctg
atccactcggtgaggaagctagctgatgtgaccattctcaccatcttctgcctgagtgtc
tttgctctggtgggcctgcagcttttcaagggcaacctcaagaacaaatgcatcaagaat
gtctctgctctctacgaagaggccaactactcgcttgatgcagcagagaaccaaatcaag
aagtcaggcacgaatgaacctttactgtgcggaaatggatctgatgcaggccactgccct
gttggttctatctgccttaaaacttctcagaacccagattttgactacaccagcttcgat
tcctttgcgtgggctttcctctctctgttccgcctcatgacacaggactcctgggaacgc
ctctaccagcagaccctgagagcttccgggaaattttatatgatctttttcgtgcttgta
atcttcctgggctctttctacctggtcaacttgatcttggctgtggtcaccatggcatat
gaggagcaaaaccaggcaaccatggctgaaattgaagcaaaggagaagaagttccaggag
gccctcgaggttctccgaaaagaacaggaggttctgacagcgctgggggtagacaccgcc
tccctccactcccacagtgggtcacctttagcctccaaaaatgccaatgagagaaggcac
aaaacaaagccaagagtatcagagggctccacggatgacaacaaggcaccccaatctgat
cattacaatcagcgcaggatgtctttcctaggcctcaactctggaatacgtcgggctagc
catggcagtgtgtatcactaccgagcccctggccgagatgcctcattccatgatgggatc
ccagatgatggagtctttcacggagatcaggaaagccatcggagctctctgctgctgagc
agagatgctagccagcaaggccccctccctaggagcccactcactcaacgccccaatcct
ggcacagggcatggagaagatggacatctcgtgttgcccgctggtgagcccatccctgga
gctccagaagtctcggtgtttgatgcagcccaaaagaaggctttcttgtcagcggaatac
ttggatgagcccttccgaacccaaagggcaatgagcgttgtcagcatcatgacctctgtg
atcgaggcctttattctgcctcaggctgtggatgaggtggccttgatcacatccagtcat
aagcctccccctctgcgggtcttcaagctggccaagtcctggccaaccctcaacacactc
atcaagatcatcgggaactcggtgggggcgctggggaacctcaccgtcatcttggtcatc
atcgtcttcatctttgccctggttggcaaacagctcctgggagaaagctacatcaaaaac
tggaagaacatctcagactctggtgagaagctgcctcgctggcacatgcatgacttcttc
cactccttcctcgtcatctttcggatcctgtgtggcgagtggatcgagaacatgtggaac
tgcatgcagatcggccaggagtccgtatgcctcgtcctcttcttgatggtgatggtgctg
ggaaacctggtggtgctcaacttattcatcgccctgctgctgaattccttcagtgccgac
aacctcacagccccagaggaagatggtgaggtgaacaacctacaggtggccctggcccgc
atccaggtgtttggccggcgtgccaggcagtggctccacagcttcctcaggaggcattgc
ttgctcccccgacccaaggcccagccacagctgcctgtgaaactgccactgtccaattcc
aaatctgggaactgcactgctgccaagtctggtcctggagggttgtctgctcccagaggc
cccaacgatgacttagtcagcggttctcttgtgtgggtctctgcacccatcgcagagggt
gaatctgatctggatgacttggaggatgacggtgaacaacagtctcagagtgcgccgcag
gacgacatccctagagggcagcaggaacagctgcagcacgctggggaccccggggacacc
cctgaacccaggagccctggctctgggatgtcctccgcagacctggccttgtacctgggt
gagaaatgggacaacgaagccactcttcaggcccctgcagagggactggatgacaccagc
ccctcggagggcagcacagtagactgcccagacccagaagaaatcctgcggaagatcccg
gagctggcagatgagctggaggagccagaggattgcttcccagaagcgtgccttcgccac
tgtccctgctgcaaggtgaacgtcgccaagtttccctggtccgtgggttggcagatgcgc
aagacctgctaccgcatcgtggagcacagctggttcgagaccttcatcatcttcatgatc
ctgctcagcagtggagcgctggcctttgaagactgttacctggacaagaagcccacggtg
caggccctgctggagtacacagacagggtgttcacctttgtctttgtgctggagatgctg
ctgaagtgggtggcgtacggcttcaagaagtacttcaccaacgcctggtgctggctggac
ttcctcatcgtggccatatcactgacaagccttacagcaaagattctggaatattctgac
atggcgcccatcaaggccctccggacactgcgtgccctgcggccactccgggccctgtct
cggtttgaaggcatgcgggtggtggtcgatgccctgctgggagccatcccgtccatcatg
aacgtcctcctggtctgcctcatcttctggctcatcttcagcatcatgggcgtgaacctc
ttcgcagggaggttttggaaatgcatcgactctagcaataaaacatttgccacggtgcct
ttgtccattgtggagaacaaaagtgaatgtgggatgcaaaattcctccggcacgtatttc
tgggtcaatgtgaaagtcaacttcgataatgttgccatgggctacctcgcactcctccag
gtggcaacctttaaaggatggatggacatcatgtacgcagctgtcgactcccgaaatatt
gactgtcaacccaagtgggaggagaatttgtacatgtacctgtactttgtcgtcttcatc
attttcggtggcttcttcaccctgaacctctttgttggggtcatcattgacaacttcaat
caacagaaaaaaaagatgaggggccaggacatcttcatgacggaggagcagaagaagtac
tacaacgccatgaagaagctgggctccaagaagccccagaagcccatcccccggcccctg
aacaagtaccagagcttcgtctttgacatcgtaaccaagcaagcttttgacgtcgccatc
atggtcctcatttgtctcaacatggtcaccatgatggtggagactgacaatcagagtgag
gagaagacccaggtcctcagcagaatcaaccagttcttcgtggccgtcttcacagctgag
tgcgtcttgaagatgtttgccctcaggcattactacttcacttttggctggaatgtgttt
gacttcatcgtggtgatcctctccattggaagtcagctgctttctacaattctgcattca
gttgaaagtcaaagtttcttctccccgacattgctccgagtcattcgcctggcacgcatc
ggccgcatcctcaggctgatccgtgcagccaagggcatccgcaccttgctctttgccctc
atgatgtccctgcctgccctcttcaacatcgggctgctgctcttcctggtcatgttcatc
tactccatcttcggcatggccacatttccccatgtgagagaggaggccggcatcgatgac
atgttcaacttcaagaccttcgccaacagcatgctatgcctcttccagatcaccacgtcg
gccggctgggatggcctcctcagccccatcctcaacacgggacccccctactgcgacccc
aaccaacccaacagcagtgactctgggggggactgtgggaacccggctgtaggcatcatc
tttttcaccacttacatcatcatctctttcctcatcgtggtcaacatgtacatcgcagtg
atcctggagaacttcaatgtggccactgaggagagcacggagcccctgagcgaggacgac
ttcgacatgttctatgagacctgggagaagttcgatcctcaagccacacagttcatcgac
tactcggccctctcaaattttgcagactgtctttctggccccctgcggatcccaaaaccc
aaccagaatatcttaatgcagatggacttgcccttggtgcccggggacaagatccactgc
ttggacattctttttgccttcaccaaaaatgtactgggagattctggagatctggattct
ctgaaagcaggtatggaagaaaagtttatggcagcaaatctttccaaagcttcctacgag
ccaatagccaccaccctcaggtggaagcaagaagatgtctcagccactgtcattcaaaaa
gcctttcggagctacatacggcaccgtgccttgaacctgtctaatgtcccaggggtaccc
agggctgatgcggacgctgggcccctcccaggtgaaggcattgttgtatttgtgactgat
gaagatggtgtgcttccagacaaatccgagactgcatctgccacatctttcccgccgtcc
tatgatagtgtcactagaggcctcagtgagacagtcaacaggagctcctccagctcattg
caaaatggagatgaagtcaccagtcatgacgtgactgcccctgggccctag
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integrated database retrieval system
