Oceanithermus profundus: Ocepr_0487
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Entry
Ocepr_0487 CDS
T01369
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
opr
Oceanithermus profundus
Brite
KEGG Orthology (KO) [BR:
opr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Ocepr_0487
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
opr03400
]
Ocepr_0487
Enzymes [BR:
opr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Ocepr_0487
DNA repair and recombination proteins [BR:
opr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Ocepr_0487
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADR35946
UniProt:
E4U673
LinkDB
All DBs
Position
complement(489511..490410)
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AA seq
299 aa
AA seq
DB search
MARREVWGLAGRRVEVKNLDKVFWPEHGYTKGDLLRYYREVAPVMLPYLRGRPLTLVMCP
DGIAAGCYYRRKRPDYAPDWMPYVPYNPRTKTGQVPLILVEDEAQLIWLANQAAVEFHVW
ASPARDLAHPSWLVLDLDPGNATGFGAVLEAARFVRKELEELGLVGWPKTSGGRGLHLLV
PLEPGRYSHAEVRAWAKAFAARLAERSGGLLRLPHGATHRGSGVFVDYAQNGYGRNTAAP
YSLRARPGAPVSTPLGWDEVEAGGFQPADFNLETVPERLRRSGDLLHGLQEHRQRLADL
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
gtggcccggcgcgaggtctgggggctggcggggcgccgggttgaggtcaagaacctggac
aaggtcttctggcccgagcacggctacaccaagggcgacctgctgcgctactaccgcgag
gtggcgccggtgatgctgccctacctgcggggccggccgctcacgctggtgatgtgcccc
gacggcatcgccgccggctgctactaccggcgcaagcggcccgactacgcgcccgactgg
atgccctacgtgccctacaaccccaggaccaagacggggcaggtgcccttgatcctggtg
gaagacgaggcgcagctgatctggctggccaaccaggcagcggtggagttccacgtctgg
gccagccccgcccgcgacctcgcccaccccagctggctggtgctcgacctggacccgggc
aacgccaccggattcggcgcggtgctggaggcggcgcgcttcgtgcgcaaggagctcgag
gaactcgggctcgtcggctggcccaagacgagcggcggaagggggctgcacctgctggtg
ccgctcgagcccggccgctactcccacgccgaggtgcgggcctgggccaaggccttcgct
gccaggctcgccgagcgttcgggcggcctcctgcggcttccccacggagccacgcaccgc
ggcagcggcgtcttcgtcgactacgcccagaacggctacggccgcaacaccgccgcgccc
tacagcctgcgcgccaggcccggcgcgccggtgagcacgccgctggggtgggacgaggtg
gaagcgggcggcttccagcccgccgacttcaacctggaaaccgtgcccgagcggcttcgc
cgaagcggggacctcctgcacggcctgcaggaacaccgccagcggcttgctgacctttga
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