Brucella pseudogrignonensis: A8A54_22075
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Entry
A8A54_22075 CDS
T04415
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ops
Brucella pseudogrignonensis
Pathway
ops03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ops00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A8A54_22075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ops03400
]
A8A54_22075
Enzymes [BR:
ops01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A8A54_22075
DNA repair and recombination proteins [BR:
ops03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A8A54_22075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ANG99235
LinkDB
All DBs
Position
2:complement(759291..761939)
Genome browser
AA seq
882 aa
AA seq
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MARDKLATYKKKRDFEKTQEPKGANRPKASMKPRFVIQKHAATRLHYDLRLELDGVFKSW
AVTRGPSLDPGDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWTPEGELTAR
EALVKGDLKFTLEGKRLRGSFVLVRMKSDRNGSKRTNWLLIKHQDAFSVSGDGAAVLDDN
DTSVASARSMDMIAAGKGRKPRPFMVETDAIAADAVWDSSQGLAAGKREKNKRMSETVKS
TPATMPDFVPPQLCETHDRPPASKNWIHEIKFDGYRIQMHVNSGAVTLRTRKGLDWTERF
PAIVKSAAALPDGIIDGEICALDESGAPDFAALQAALSEGNTDALVYFAFDLLFDGIEDL
RQLALTHRKQRLEQMVESVSEDPLIRYVTHFETGGEAVLRSACRLSLEGIVSKQADTRYV
SGRSDSWVKSKCRSGHEVVIGGYATTNGKFRSLLVGVNRDRHFVYVGRVGTGYGAKTVAG
ILPKLRALEARKSPFTGIGAPKGGTDIKWLKPQLVAEIQFAGWTADGLVRQAAFKGLRED
KPAKEVVAEKPAAPSDVDVPENDTAKPGDILTSQSGGKPNIMGVLISSPDKTLWPDAGDG
KAVTKLDLARYYEAVGPWLINHVKGRPCSVVRAPDGLQGEQFFQRHALPGTSNLIELVEV
FGDRKPYLQIDRVEGLAAVAQMGGVELHPWNCLPYQPEIPGRLVFDLDPGPDVAFSSVIE
AALEMRDRLDQLGLVSFCKTTGGKGLHVVTPLGGGKGKKLSWAEAKGFAHDVCQQMAGDH
PDRYLIKMTKSQRKGRIFLDYLRNDRMSTAVAPLSPRMREGATVSMPLNWTQVRKGLDPK
RFTIRTVPALLGKTKVWQDYCDEQRSLREAIKKLEKSIRPPA
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atggcccgcgataaactcgcaacctacaaaaaaaagcgcgactttgaaaagacgcaggag
ccaaaaggcgcgaaccggccgaaggcctccatgaagccgcgcttcgttattcaaaaacac
gccgcgacgcgactgcattacgatctgcgtcttgaacttgacggtgtcttcaaatcctgg
gccgtgacccggggaccttctcttgatcccggcgacaagcgcctggcggtcgaggtcgaa
gaccatccgcttgattacggggatttcgagggaacgatccccaaaggtcaatatggcggc
ggcacggtgatgctctgggaccgtggttactggacaccagaaggagaattgaccgcccgg
gaggcgcttgtcaaaggtgatctgaaattcacgctcgaaggtaagcgactgcgtggcagc
tttgtgctggtgcgcatgaaatcggatcgcaatggctccaagcgcaccaactggttgctg
atcaagcatcaagacgcgttttccgtgtctggtgacggtgctgccgttttggacgacaat
gacacttctgtcgcatccgctcgttccatggatatgatagcagccggcaaaggcagaaag
ccgcgccccttcatggtcgaaactgacgctatcgcggcagacgccgtttgggatagcagt
cagggccttgctgctggaaagcgcgaaaagaacaaaaggatgtcggagaccgtcaagtca
acgcccgccaccatgccggacttcgtcccaccccaattatgtgaaacccacgacaggccg
ccggcttcgaaaaactggattcacgaaattaaattcgacggctaccgcatccagatgcat
gtcaattctggcgcagtcacattgagaacccgaaagggcctcgactggaccgaaagattt
ccagccattgtaaaaagcgcggcagcactccccgacggcatcatcgatggggaaatctgc
gcgctggacgaaagtggagcacctgattttgcagcattgcaggcagctttgtccgagggc
aacaccgatgccctcgtttatttcgcgtttgatctgctttttgacggcatcgaggacctg
cggcaacttgctcttacccaccgcaagcaacggctcgagcagatggtagaaagcgtcagt
gaggatccgctgatccgctatgtgacacattttgaaacaggcggggaagcggttctgcgt
tccgcctgtcgtctttcgctggaaggcatcgtttccaaacaggcggacacccgctatgtc
tcgggtcgttccgacagctgggtcaagtccaaatgccgttcaggccatgaagtggtgatt
ggcggttatgccacgaccaatggcaaattccgttctttgctcgtcggcgtcaatcgcgac
agacatttcgtatatgttggtcgtgtcggtaccggctatggcgcaaaaaccgttgcgggc
attctaccgaaacttcgtgcgcttgaggccaggaaatcgccttttaccggtatcggtgcg
cccaagggaggcaccgatatcaaatggctgaaaccgcaactggtcgcagagatacaattc
gccggctggacggcagacggcctcgttcgccaagcggcgttcaaaggcttgcgcgaagac
aagccagcgaaagaggtggttgccgaaaagccggcagcgccgagcgatgtcgatgtgcct
gagaacgacaccgcaaagcctggagatatcctcacctctcaatcaggcggcaagcccaat
atcatgggcgtattgatttccagccctgataaaacgctctggccggatgccggggatgga
aaagcggtcacaaaactcgatctcgcccgctattacgaggcggtgggaccgtggttgatc
aaccatgtcaaaggccggccctgctcggtggttcgcgcgcccgatggtttgcagggcgag
cagttcttccagcgtcacgcgctcccgggtacctcgaacctgatcgaactcgtagaggtg
tttggtgacaggaagccctatctccagatcgatcgggtggaagggctcgcagcagtcgcg
caaatgggtggcgtcgaactgcatccgtggaattgtttaccctatcaaccagaaatccct
ggtcggctggtgtttgatctcgatcctggccctgacgtggctttttcgagcgttatcgaa
gcggcgctggaaatgcgcgatcgccttgatcagcttggtctggtcagcttctgtaaaacc
acgggcggcaagggactgcacgtagtcacgccgcttggcggtggcaaaggcaaaaaactc
agctgggcagaagccaagggtttcgcacacgatgtctgccagcaaatggccggcgaccat
cccgatcgctacctgatcaaaatgaccaaaagtcagcgcaaaggccgtatttttctggac
tacctacgcaatgaccgcatgtcgacagccgttgcaccgctctcacccagaatgcgcgag
ggggcgacggtgtcgatgccgctcaactggacccaggtcagaaagggcctcgaccccaag
cgttttacaattcggaccgttcccgcgctgctcggaaagacaaaggtctggcaggactat
tgtgacgaacaacgttcccttcgtgaggcgataaagaagctcgaaaaatcgatacgtcca
ccagcttga
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