Zophobihabitans entericus: IPMB12_01105
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Entry
IPMB12_01105 CDS
T06493
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
orb
Zophobihabitans entericus
Pathway
orb03030
DNA replication
orb03430
Mismatch repair
orb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IPMB12_01105 (dnaE)
03430 Mismatch repair
IPMB12_01105 (dnaE)
03440 Homologous recombination
IPMB12_01105 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
orb03032
]
IPMB12_01105 (dnaE)
03400 DNA repair and recombination proteins [BR:
orb03400
]
IPMB12_01105 (dnaE)
Enzymes [BR:
orb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IPMB12_01105 (dnaE)
DNA replication proteins [BR:
orb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IPMB12_01105 (dnaE)
DNA repair and recombination proteins [BR:
orb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IPMB12_01105 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
MeaB
HHH_3
HROB
Motif
Other DBs
NCBI-ProteinID:
QIQ20398
UniProt:
A0A6G9I854
LinkDB
All DBs
Position
complement(233205..236684)
Genome browser
AA seq
1159 aa
AA seq
DB search
MTEPKFIHLHVHSDFSMIDGMAKTSSLVKQAAKMRMPALAITDFTNFCGLVKLYSTSLGQ
GVKPIIGADLDIRSDDLGDEVYRVTVLTMNNAGYKNLTLLISEAYQRGYIGDGPVVDRDW
LIKHQEGLIILAGRKSDVGFGVIRGNQALVDNALQFYQTHFPERFYLELVRTGRENEELY
VEQAVKLAEQYELPVVATNDVCFLSADDFDAHEIRVAIHDGDTLDDPKRPKKYSPQQYFR
SEQEMCELFADIPEALVNSVEIAKRCNVSIRLGENFLPQFPSGDMSTEEYLVHKSEEGLE
ERLEFLFPDPAVRAEKRGEYDERLKIELDVINQMGFPGYFLIVMEFIQWSKDNGVPVGPG
RGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVIDHVAEM
YGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLEKAFEIEPQL
QTLYDGNEEVKALIDIARQLEGVTRNAGKHAGGVVISPTKITDFSPIYCDPEGHHPVTQF
DKNDVEYAGLVKFDFLGLRTLTIIDWALKMINERLEKEGKEPIDIARIPLDDQVAFDVLL
KAETTAVFQLESRGMKDLIRRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREAV
SYPDNQYQHESLKPILEPTYGIILYQEQVMQIAQTLSGYTLGGADLLRRAMGKKKPEEMA
KQRSVFKEGAESCGIDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE
FMAAVMTADMDNTDKIVSLVDECWRMGLKVNPPDINSGLYHFHVNERGEIVYGIGAIKGV
GEGPIEAIVEARNQGGYFKDIFELCARSDMKRIGKRVLEKLTRAGAFDRLGPHRAAILHS
INDATQAAEQHAKAMEIGQGDMFGVLAEQPEQVEHAYANVPPLPEQVILDGERETLGLYL
SGHPITQYLKELERYTSSSRLSEVVPTDWGKSTTIAGLVLTARVRITKTGKRIGLCTLDD
RSGRIEAMLFGETLERYEHLLVEDKILIVSGQVSVDDFNGGFRMSAREVMDLSEAREKYV
RGLAISLDSAQINRTLMQNLQQTFEPHKNGTVPVNLYYQRADARARVRFGTKWRVTPNDK
LLVDLKSLLGNEQVELEFE
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgacagaacctaaatttattcatctccatgttcatagtgacttctctatgattgatggt
atggcaaaaaccagctctcttgtgaagcaagcggcaaaaatgcgcatgccggctttggcg
atcacagattttaccaatttttgtggactggttaagctctacagtacctctcttggacag
ggtgttaagccaattatcggtgctgatttagatattcgtagtgatgatctgggtgatgaa
gtttaccgtgtcactgtactgacaatgaataatgccggttataaaaatctgactctgctt
atctctgaggcctatcaacgaggttatattggcgatggtccggtggttgaccgggactgg
ctgattaagcatcaggaaggtctgattattcttgccggacgtaaaagtgatgttggcttt
ggtgtcattcgtggtaatcaggctttagttgataatgctttgcagttttatcaaacacat
ttccctgagcgtttctatctggaattggttcgaacaggtcgcgaaaatgaagaactttat
gtcgaacaggctgtaaaattagctgaacagtatgaacttcctgttgttgccactaatgat
gtctgttttttaagtgcagatgactttgacgcgcatgaaattcgggtcgctattcatgat
ggtgatactttagatgatccaaaacgcccgaaaaaatactccccacagcaatacttccgt
agtgaacaggaaatgtgtgagctgtttgccgatattccggaagcattagttaatagcgtt
gaaattgctaagcgttgtaatgtttcaatccgacttggtgaaaactttttaccgcagttt
ccgtcgggtgatatgtcaaccgaagagtatctggtacataaatcagaagagggtttagaa
gagcgtctggaatttttattccctgacccagctgtgcgggctgaaaagcgtggtgaatat
gatgagcgtctgaagattgaactggacgtgatcaatcagatgggattcccaggttacttc
ttaatcgtaatggaatttattcagtggtcaaaagataatggtgtgcctgttggtcctgga
cgtggttctggtgctggttctctggttgcttatgctttaaaaattactgatttagaccct
cttgaatttgacctgctattcgaacgattcttaaatcctgagcgggtttctatgcctgac
tttgacgttgacttctgtatggagaaacgggacttagttattgatcacgtagcagaaatg
tatggtcgagatgccgtatcacaaattattacttttggtactatggcggctaaagcagtt
atccgtgatgtaggccgtgtactgggtcatccttatggctttgtagatcgtatttcaaaa
ttgattccacccgatccgggtatgacgctggaaaaagcgttcgaaatagagccacagttg
caaacgttatatgacggcaatgaagaagttaaagcgctgatcgatattgctcgccagtta
gaaggcgtgacgcgtaatgccggtaaacacgccggtggtgtggtgatttcaccaaccaag
atcactgacttctcaccaatttattgtgatccggaaggccatcacccggtgacacagttc
gataagaatgacgtggaatacgcaggtctggttaagttcgacttcttagggcttagaacg
ctgactattattgactgggcgctgaagatgattaacgagcgcttagagaaagaaggcaaa
gagcctattgatattgctcgtattccactggatgatcaggttgcatttgatgtactttta
aaagccgagacaactgcggtattccagctggaatctcgcggtatgaaagatttgattcgt
cgtttaaaacccgactgctttgaagatatgattgctctggtagccttgttccgtccaggg
ccattacaatccggcatggtagataactttatcgaccgtaaacacggtcgtgaagcggtt
tcttatccggataatcaatatcagcatgagtccttaaaaccgattttagaaccaacctac
ggtattatcttgtatcaggaacaggtgatgcagattgcgcagactctgtctggctatacg
ctgggtggtgcggacttattacgccgggcaatgggtaagaaaaaaccggaggaaatggca
aaacagcgctcagtatttaaagaaggtgcagagagctgtggtattgacggcgaactttct
atgaagatctttgacttagtagaaaaatttgctggttatggttttaacaaatctcactcc
gctgcttatgcgctggtttcttaccagactctttggcttaaagcgcactatccggctgaa
tttatggctgcggtaatgaccgctgatatggataatacggataaaatcgtcagtctggtc
gatgagtgctggcgcatgggtcttaaagtcaatccaccagatattaacagcggtctgtat
catttccatgtcaacgaacgtggtgagatcgtttacggtattggtgcgattaaaggtgtg
ggtgaaggcccgattgaggcgattgtagaagcacgtaatcagggtggttactttaaagat
atttttgaactttgtgctcggtcagacatgaagaggattggtaagcgggtgctggaaaaa
ctcacacgagcaggtgcgtttgaccgtttaggacctcatagagcagcgattttacacagt
attaatgatgcgacacaagcggcagagcaacacgctaaagcgatggaaattgggcaaggc
gatatgtttggagtgctggcagaacaaccagaacaagttgaacatgcttacgccaatgtg
ccaccgctacctgaacaggttattttagatggtgaacgtgagacgttagggctttattta
agtggtcatcccatcactcagtatttgaaagagcttgaacgttataccagtagttcccgt
ttaagtgaggttgtgccaactgattggggtaaatcgactacgattgccggactggtcttg
accgccagagtacgtatcactaaaacgggtaaacgtattggtttatgcacgctggatgac
cgctccggtcgtattgaagcgatgctttttggtgaaactctggaaagatatgaacatttg
ctggtggaagataaaatcttaattgtctctggtcaggtgagtgtcgatgactttaatggc
ggttttagaatgtcagccagagaagtgatggatctgagtgaagcgcgggaaaaatatgtg
cgtggtctggcaatttctcttgatagtgctcagattaatcgtactttaatgcagaatcta
cagcagacattcgagccacataaaaatggtactgtgccggtaaatctctattatcagcgt
gcagatgccagagcgcgagtccgttttggtaccaagtggcgggtcactccaaatgataag
ttactggtcgatcttaagtcattactgggtaatgagcaggttgaacttgagtttgaataa
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