Zophobihabitans entericus: IPMB12_02320
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Entry
IPMB12_02320 CDS
T06493
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
orb
Zophobihabitans entericus
Pathway
orb03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
orb00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IPMB12_02320 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
orb03021
]
IPMB12_02320 (rpoC)
03400 DNA repair and recombination proteins [BR:
orb03400
]
IPMB12_02320 (rpoC)
Enzymes [BR:
orb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IPMB12_02320 (rpoC)
Transcription machinery [BR:
orb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IPMB12_02320 (rpoC)
DNA repair and recombination proteins [BR:
orb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IPMB12_02320 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
QIQ20621
UniProt:
A0A6G9I8S6
LinkDB
All DBs
Position
508629..512846
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESFMVLNGGMTNLERGQILTEEQYLDALEEFGDEFDARM
GAEAIQELLRNLDVAGECDQLRDELSITNSETKRKKLTKRIKILEAFTLSDNKPEWMILN
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAIAGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLERRGYATTIKAAKKMVEREDAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPASGEPIIVPSQDVVLGLYYMTRDRVNAKGEGMVLTGPKEAEKLYRLG
LAELHARVKVRITEHTQNSAGQWETTTSLVDTTIGRSILWLIIPKGLPFSLVNQPLGKKA
ISKTLNTCYRQLGMKQTVILADQIMYTGFAYAARSGISVGIDDMEIPAKKVEIIAEAEAE
AAEIQQQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSVDMVKNSEGKEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTLEGVVMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILIPRNVLLDEHYCDLLEEELIDSVKVRSVVSCNTDFGVCAKCYG
RDLARGHIINKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
DRAKFVVNPEKKLVITSRNTALTIMDEFGRMKETYKIPYGTILSKGDGASVTAGETIANW
DPHTMPVIAEVGGFVRFIDMVDGQTITRQTDDLTGLSSIAILDVAERTGLGKDLRPAIKV
VNAKGKDVFVTGSELPAQYFLPGKALIQLEDGAQINPGDVLARIPQESVGTKDITGGLPR
VADLFEARKPKEPAILAEVDGVVSFGKETKGKRRLIISPLDNSEPYEEMIPKWRQLNVFE
GEEVSRGDVISDGPESPHDILRLRGVNAVTRYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIIHPGNTRFLEGEQLEVARIKIVNRELVAQGKEPATYTHDLLGITKASLTTESFI
SAASFQETTRVLTEAAVAGKNDELRGLKENVIVGRLIPAGTGYAYHKERLRRKQREAGLE
SMEPSITAEEATANMAELLNSASDD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctaaaagcacaaactaaaactgaagagtttgatgcaatt
aaaattggactagcgtcaccagacatgattcgttcatggtcttttggtgaagttaagaag
cctgaaactattaactaccgtacctttaaaccggaacgtgatggtttattctgtgctcga
atttttgggccagttaaagactatgaatgtctgtgcggtaagtacaaacgtttaaaacac
cgtggtgtgatttgtgaaaaatgtggtgttgaagttactcagactaaagtacgtcgtgag
cgtatgggtcatattgagcttgcttctccaacagcgcacatttggttcttaaaatcacta
ccgtctcgtatcggtttattacttgatatgccactacgtgatattgaacgtgtactttat
tttgaatcattcatggtgctaaatggcggcatgactaatttagaacgtggtcagatttta
actgaagagcaataccttgatgcacttgaagaatttggtgacgaattcgacgcgcgtatg
ggtgcagaagcgattcaggaattattacgtaaccttgatgttgctggtgagtgtgatcaa
cttcgtgatgagttatcgattactaattcagaaactaaacgtaaaaaactgactaagcgt
attaaaattttagaagcattcactctctctgataataaaccagagtggatgatcttaaat
gtgcttccggttcttccaccagatttacgtccactcgtaccacttgatggtggtcgtttt
gcgacgtctgatctgaacgatttatatcgtcgtgtgatcaaccgtaataaccgtttaaaa
cgcctgttagatttagcagcaccagatattatcgtacgtaacgaaaaacgtatgttacaa
gagtctgtggatgcgctacttgataatggtcgtcgtggccgtgcaattgccggttctaac
aaacgtcctctgaaatcacttgctgatatgatcaaaggtaagcaaggtcgtttccgtcaa
aacttacttggtaagcgtgttgactattcaggccgttctgtaattaccgtaggtccatac
ttacgtctacaccaatgtggtttaccgaagaaaatggcacttgagctattcaaaccattt
atctacggaaaacttgagcgccgtggttatgcaacaaccatcaaagcagcgaagaaaatg
gtggagcgtgaagacgcaattgtttgggatatcttagatgaagtgattcgtgaacatccg
gtattattaaaccgtgctccgacactacatagactaggtattcaggcatttgaaccaatt
ttgatcgaaggtaaagctattcagttacatccactcgtttgtgcggcattcaacgccgac
ttcgatggtgaccaaatggcggttcacgttccattaacgctcgaggctcaacttgaagct
cgtgcattaatgatgtcaaccaacaatatcctttctcctgcaagtggtgagccgatcatc
gttccttcacaggacgttgttttaggtctttactacatgacacgtgatcgtgtgaatgca
aaaggcgaaggcatggtcttaacgggtcctaaagaagcagaaaaactgtatcgtttaggc
ttagcagaacttcatgctcgtgtgaaagtgcgtattactgaacacacacaaaatagtgca
ggtcaatgggagacaacaacgtctttagttgataccactattggtcgttcaattttatgg
ctgatcattccaaaaggtttaccgttctcacttgtgaaccagcctttaggtaaaaaagcg
atctctaaaacattaaatacttgttatcgtcaactaggcatgaaacaaactgttattctt
gctgaccaaatcatgtataccggttttgcttatgcggcacgttctggtatctctgttggt
attgacgatatggaaatcccagctaagaaagttgaaatcattgcagaagctgaagctgaa
gcagctgaaattcaacaacagttccaatcaggtcttgttacagctggtgaacgttataac
aaagttatcgatatctgggctgctgctaacgaacgtgttgcaaaagcgatgatggataac
ttatctgttgatatggtcaaaaatagtgaaggtaaagaagagaaacaagcttctttcaat
agtatctatatgatggccgattctggtgctcgtggttctgcagcacagattcgtcagtta
gcaggtatgcgtggtttgatggctaaaccagatggttcgatcatcgaaacaccaatcacg
gcaaacttccgcgaaggtctgaacgttcttcagtactttaactccacccatggtgcgcgt
aaaggtttggccgatacagcattaaaaacagcaaactctggttacttaactcgtcgtcta
gttgacgtggcacaagaccttgtgatcatcgaagacgactgtggtacgcttgaaggtgtt
gtcatgactccggttattgagggtggtgatgttaaagaaccactacgtgatcgagttctt
ggtcgtgtaacagcagaagacgtattaaaaccaggtactgcagatattctgattccacgt
aacgtgttacttgatgaacactactgtgatcttcttgaagaagagctgatcgacagtgtt
aaagtacgttcagtggtatcttgtaatactgattttggtgtgtgtgctaagtgttatgga
cgcgaccttgctcgtggtcatatcatcaataaaggtgaagcggttggtgttattgcagca
caatcaatcggtgaaccgggtacacagttaacgatgcgtacgttccatatcggtggtgcg
gcgtcgcgtgcggcagctgaatcaagtattcaggttaaaaacaaaggtagcatcaaacta
gacagagcgaaatttgttgttaacccagagaagaaattagttatcacatctcgtaataca
gcgctaactattatggatgagtttggccgtatgaaggaaacgtataagattccttacggt
acgattctatctaaaggtgatggcgcttcagttacagcgggtgagacaattgctaactgg
gatccacataccatgcctgttatcgctgaggtaggtggttttgttcgctttatcgatatg
gttgatggtcaaactatcacgcgtcaaaccgatgatttaactggtctatcttctatcgca
atccttgacgttgcagagcgtactggtcttggtaaagatctgcgtccagcaattaaagtt
gtgaatgctaaaggtaaagatgtgtttgtaactggttctgaactgccagctcaatacttc
ttaccaggtaaagcattaattcagttagaagacggcgcgcaaatcaatccgggtgatgtt
cttgcacgtattccacaagaatctgtaggtactaaagatatcaccggtggtctaccacgc
gtagcagatctatttgaagcacgtaaaccaaaagagccagcaattcttgctgaggttgat
ggtgttgtatcatttggtaaagaaactaaaggcaaacgtcgtctgattatttctccgctt
gataactctgagccgtacgaagagatgattccaaaatggcgtcagctaaacgtgttcgaa
ggtgaagaagtgtctcgtggtgacgtgatctctgatggtcctgagtctccgcatgatatt
ctacgtttacgtggtgtaaatgctgtaactcgttatattgtgaacgaagtgcaggaagtt
taccgtttacaaggcgttaagatcaacgataaacacattgaggttatcgttcgtcaaatg
ctgcgtaaagcaacaattattcatccaggtaatacacgcttcttagaaggcgaacaactt
gaagttgctcgtattaagattgtgaaccgtgaacttgttgctcaaggtaaagagccagca
acgtatacacatgacttgttaggtattactaaagcatctctgacaacagaatcattcatt
tctgcagcatcgttccaggaaacaactcgcgtgttaactgaagcagcagtagcaggtaaa
aatgatgaattacgaggcctgaaagaaaacgttatcgttggtcgtctgattcctgctggt
acaggttatgcataccataaagagcgcttacgtcgtaaacaacgtgaagcaggtcttgaa
agtatggaaccaagcatcacagcagaagaagcaaccgcgaatatggcagagcttttaaat
tctgcgtctgatgactaa
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integrated database retrieval system
