Ornithobacterium rhinotracheale DSM 15997: Ornrh_0056
Help
Entry
Ornrh_0056 CDS
T02145
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
orh
Ornithobacterium rhinotracheale DSM 15997
Pathway
orh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
orh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Ornrh_0056
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
orh03021
]
Ornrh_0056
03019 Messenger RNA biogenesis [BR:
orh03019
]
Ornrh_0056
Transcription machinery [BR:
orh03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Ornrh_0056
Messenger RNA biogenesis [BR:
orh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Ornrh_0056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
SAP
Motif
Other DBs
NCBI-ProteinID:
AFL96287
UniProt:
I3ZX53
LinkDB
All DBs
Position
complement(56623..58350)
Genome browser
AA seq
575 aa
AA seq
DB search
MFDLNELTSKKVAELRDIAKDMGLKGFQPLKKQELIYLILDQQASNAVAQKSTSDRNKQK
KNKHSEKNQNEQNEASQEQKQRKNVHQKEQAHTPDDVSKSDNDKDQNESKNNNNRRNNKQ
NNRNQNNNNQSNGGNQKQNRNNNQRNQHNHSNQQKANQPNNNQQNNNEENNNQNAGQQNQ
KNNHQQQNQKDKKPRNKFLDPNFEFDGIIDAEGVLEIMNEGYGFLRSSDYNYLSSPDDVY
VSQSQIKLFGLKTGDTVTGEVRPPKEGEKYFPLLKIKEINGRDPEYVRDRVAFEHLTPLF
PNERFHIAEKNNTISTRIVDLFSPIGKGQRGMIVAQPKTGKTMLMKDIANAIAANHPEIY
QIILLIDERPEEVTDMQRNVQGEVVASTFDEPAERHVKVANIVLSKAKRLVECGHDVVIL
LDSITRLARAYNTVAPASGKILTGGVDANALHMPKRFFGAARNIEGGGSLTIIATALIDT
GSKMDEVIFEEFKGTGNMELQLDRRIANKRIFPAIDLISSSTRRDDLLLDEPTSQRMWAL
RKIMSDMNPVEAMEFLKRQIELTHSNEEFLVSMNK
NT seq
1728 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatcttaacgaattaacgagtaaaaaagttgctgagcttcgcgatattgccaaa
gatatggggcttaagggctttcaaccacttaaaaaacaggagttaatctatctgattttg
gatcaacaagcatctaatgctgtggctcaaaaatcaacttctgacagaaataagcaaaag
aaaaataaacattctgagaagaatcaaaacgagcagaatgaagcatcgcaagagcagaaa
cagcgtaaaaatgttcatcaaaaagaacaggcacacacaccagacgatgtttctaaaagc
gataatgataaagaccaaaacgagtctaaaaacaataacaaccgccgcaataataagcaa
aataatcgcaatcaaaataacaataaccaaagcaacggcggaaatcaaaagcaaaatcgc
aacaacaatcagcgaaaccagcacaaccactccaatcaacaaaaggctaatcagccaaac
aataaccagcagaataataacgaagaaaataataatcaaaatgctgggcaacaaaatcaa
aaaaacaaccatcagcagcaaaatcaaaaggacaaaaagcctagaaataaattcttggat
ccgaattttgaatttgatggaataatagatgcagaaggtgttttagaaatcatgaacgaa
ggctatggtttcctacgctcatcagattacaattacctctcatctccagatgatgtatat
gtttctcaatctcagattaaactatttggtcttaaaacaggagataccgtaacgggcgaa
gtgcgcccaccgaaggaaggcgaaaaatattttccacttttaaaaataaaagaaatcaat
gggcgcgatccagaatatgtgcgcgatcgtgtagcttttgagcatttaacgccacttttc
cctaatgagcgtttccacattgcagaaaaaaacaatactatttccactcgtattgtagac
ctcttctctcctatcgggaaaggacagcgtggtatgatcgtggctcagcctaaaacaggt
aaaaccatgctcatgaaagacattgcaaatgccattgcagccaatcacccagagatttat
caaatcattttgttgattgatgagcgtccagaagaagtaaccgatatgcaacgcaatgtg
caaggcgaagtagtagcttctacttttgacgagcctgcagaacgccatgtaaaagttgcc
aatattgtgctctctaaagccaaaagattggtggaatgtgggcacgatgtagtgattttg
ctcgactcaatcactcgtttggcgcgcgcctataacaccgtagcaccagcatcgggcaaa
atcttgacaggtggtgtagatgccaacgcgttgcacatgccaaaaagattcttcggagcc
gcaagaaatattgaaggcggaggatcgctcaccatcatcgccacagcacttatagataca
ggctctaagatggacgaagtgatttttgaagaatttaaaggaactggaaacatggagctc
caattagacagaagaattgccaacaaacgaattttccctgccattgatttaatttcatcg
agcacgcgtagagatgatttgttgcttgatgagccaacctctcaaagaatgtgggcactt
cgcaaaatcatgtctgatatgaatcctgtagaggcaatggaattcttaaaaagacaaatt
gaactcactcatagcaacgaagaatttttggtttctatgaataaataa
DBGET
integrated database retrieval system
