Ornithobacterium rhinotracheale DSM 15997: Ornrh_2282
Help
Entry
Ornrh_2282 CDS
T02145
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
orh
Ornithobacterium rhinotracheale DSM 15997
Pathway
orh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
orh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ornrh_2282
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
orh03400
]
Ornrh_2282
Enzymes [BR:
orh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ornrh_2282
DNA repair and recombination proteins [BR:
orh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ornrh_2282
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
UB2H
Motif
Other DBs
NCBI-ProteinID:
AFL98413
UniProt:
I4A379
LinkDB
All DBs
Position
2306907..2310293
Genome browser
AA seq
1128 aa
AA seq
DB search
MPYLCLVLKEITIQQWYNEHQSSDLVHSLVQFVEKQAHSNLQIKGLVGSYFSLLTAAVFN
QTKKNILLIFNDTEEAAYTLNELESVFGKEKVLYFPASHRRPYEIEQTNNANVVLRTEVL
NKLANSTKTHIMVTTAQALTEKVVTKKTLNTKTQKIKVGEKLSVEFLNEVLFSYDFHRTD
FVTEPGEFSVRGGIVDIFSFSDDQPYRISFFGDEVESIRKFDLESQLSVEKVNSFTVIPN
MENKTLTEKRQSFLDFLPKSTLIFAKNLILSQDHIAKNFDLAQENFENLSGEIQHLSPED
LFNTAEEIENQLKNKFLIEFSHQTLFTPVDVFELHQSPQPTFNKQFELLIETLEQQHEQG
YKNYIFCSGEKQIQRFEEIFSDMGKEVHFTPVLGTLHEGYIHHDAKICCFTDHQIFERYH
RFNLRNKFSKSESITLKELTALQVGDYVTHIDHGVGKFGGLKRIDVNGKMQESIKLIYQD
NDVLYVSIHSLHKISKFNGKDGKEPKINKLGSPAWRNLKNKTKRKVKEVAFDLIKLYAKR
KMEKGFSFSPDTYLQNELEASFMYEDTPDQLKATEDVKADMESSRSMDRLVCGDVGFGKT
EVAVRAAFKAATDGKQVAILVPTTILAFQHYNTFKERLKDFPVRVEYLNRFRTTKEKNAI
LKDLEAGKIDIIIGTHQLVNNKIKYKDLGLLIIDEEHKFGVSVKDKLKTLRAHLDTLTLT
ATPIPRTLQFSLMAARDLSVIKTPPPNRQPVQTQIIGLNEEAIRDAVFYEIQRGGQVFVI
YNRIAGLQEMAGMLQRLIPEAKIAVGHGQMEGKKLEKILLDFMDGKYDILVSTTIVESGV
DVPNANTMLIVDAQNYGLAELHQMRGRVGRSNRKAFCYLITPPLVTLTNEARKRLQAIEQ
FSDLGSGFNIAMKDLEIRGAGNLLGAEQSGFMAEMGFDTYQKILNEAIEELKYSDDFKDL
FNDENQKQQDFVSDFNLDADTEILIPYEYVNNVEERMVLYQRLAEIETPEQLKAYTEELI
DRFGEMPAEVEELLESVELKWEAKKLGIEKIVLKQNKMLCYFISNPQSPFFETENFRKIP
AFIAQNPAICSLQEKKLKGNDFNTLILKISPIKSVGEAKQCLVNILNL
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgccgtatctttgtctcgttttgaaagaaattacaatccaacagtggtataatgagcat
caatctagcgatttggtgcattcgctcgtgcaatttgtagaaaaacaagcacatagcaat
ctgcaaatcaagggcttggtgggctcgtattttagtcttttgacggcggcggtttttaat
caaaccaagaaaaatatacttttaatctttaacgataccgaggaggcggcttatacactc
aacgaacttgaaagcgtgtttgggaaagaaaaagtgttatattttcccgcgtctcatcgt
cgtccttacgagattgaacagaccaataatgccaatgtggtgttgcgtaccgaagtgctc
aataaattagccaattcaaccaaaacacatattatggtaaccaccgcacaggcactgacc
gagaaggtagttaccaaaaaaacactgaacactaaaacgcagaaaatcaaagtaggagag
aagctttcggtagagtttttaaacgaagttttgttttcatatgattttcatcgcacggat
tttgtgactgagcctggcgaattttcagtgcgaggcggaattgtggatattttctcattt
tcagatgaccagccgtatagaatttcgttttttggtgatgaggtagaaagcatcagaaaa
ttcgatttagagagtcagctttcggtggagaaagtcaatagttttacggtgattcctaac
atggaaaacaaaaccttgaccgagaaaagacaatcttttttagactttttgcctaaaagc
actttgatatttgccaaaaatctgattttatcgcaagatcatattgccaaaaactttgat
ttagcccaagaaaattttgaaaatttatcgggagaaatccagcatttgtcgcccgaagat
ttatttaacacagcagaagagattgaaaatcagttaaaaaataaatttttaattgaattt
tcgcaccaaactttatttactccagttgatgtttttgagttgcaccaatcgccgcaacct
acctttaataaacaatttgaattgttgatagaaacccttgagcaacaacatgagcagggc
tataaaaactatattttttgttcgggagaaaagcaaattcagcgttttgaggaaatcttt
tcagacatgggcaaggaagtgcattttacgcctgttttaggcactttgcacgagggctat
attcatcatgatgctaagatttgttgctttaccgatcaccaaatttttgaacgctatcat
cgatttaatttaagaaataaattctctaaaagcgagagcattacgctcaaagagcttacg
gcattgcaagtgggcgattatgttacgcatatagaccacggcgtggggaaatttggcggg
ctcaagcgtatcgatgtcaatggtaaaatgcaggaaagcattaagcttatttatcaagac
aacgatgtgctgtatgtgagcattcactcgctgcataaaattagcaaattcaacgggaaa
gacggcaaagagccaaaaatcaataaattaggttcgcccgcatggcgaaatcttaaaaat
aaaactaaacgaaaagtaaaagaagtcgcctttgatttaattaagctttacgccaaacga
aaaatggaaaaaggctttagcttttcgccagatacatatttgcaaaacgagctggaggca
tcttttatgtacgaagacacgccagatcagctcaaagccaccgaagatgtaaaagccgat
atggaaagcagtcgttcaatggacaggctcgtgtgtggtgatgtaggttttggcaaaact
gaagtagcggtgcgtgcggcattcaaggcagcaaccgatggcaagcaagtggcgattttg
gtgcctacgactattttggcttttcagcattataacacatttaaagagcgtttaaaagac
tttcccgtgcgtgtggagtatcttaaccgatttagaaccaccaaggaaaaaaacgcaatt
ttaaaggatttagaagcggggaaaattgatatcattatcgggacacatcaattggtgaac
aataaaatcaagtataaagatttaggtttgctaattatagacgaggaacataaattcggg
gtgtctgtcaaagataaattaaagaccctgcgtgcgcatctggatacgcttacgcttacg
gcaacaccgattccgcgtactttgcaattctcgctgatggcagcacgagatttaagcgtg
attaaaacgccaccgcctaaccgccaacctgtgcaaacgcaaatcatagggctaaacgaa
gaggcgattagagatgcggtgttttacgaaattcagcgaggcggacaagtctttgtgatt
tacaaccgaatcgcaggtttgcaagaaatggcgggcatgcttcagcgattaatccctgag
gctaaaatcgccgtgggacacggacaaatggagggcaagaaattagaaaaaatcttgctc
gatttcatggatggtaaatacgatattctagtttctaccacgattgtggaaagtggtgta
gatgtgccgaatgccaatacaatgctgattgtagacgcgcaaaattatggtttggcagaa
ttacaccaaatgcgcggacgggtagggcgaagcaaccgaaaagccttttgctacctaatc
acgccgccgctggtaacgcttaccaacgaggcacgaaaaagattgcaagccatagagcaa
ttcagcgatttgggctcaggatttaatatagcgatgaaagatttggaaattcgtggtgca
gggaatttgctcggagcggaacaaagcggatttatggcagaaatgggatttgatacttat
caaaaaatcttgaacgaagccattgaagaattaaaatattccgatgatttcaaagattta
ttcaatgatgaaaatcaaaaacagcaagattttgtttcagattttaatttagatgccgac
accgaaattttgattccgtatgaatatgtgaacaatgttgaggagcgtatggtgctgtat
cagcgtttggctgaaatagaaacgcctgagcagctaaaggcttataccgaggaacttatc
gaccgatttggcgaaatgcctgccgaagtcgaggaattgcttgaatcggtagagttgaaa
tgggaggctaaaaaattaggcattgaaaaaattgttttaaaacagaataaaatgctttgt
tatttcattagcaatccgcagtctccattctttgaaaccgagaattttaggaagattcct
gcctttattgcacaaaatccagctatctgcagtttgcaagaaaaaaagctaaaaggcaat
gattttaatactttaattttaaaaatttcgcctataaaatcggtgggcgaagccaaacaa
tgtttggtcaatattttaaatctttaa
DBGET
integrated database retrieval system
