Ornithobacterium rhinotracheale ORT-UMN 88: Q785_11550
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Entry
Q785_11550 CDS
T03303
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ori
Ornithobacterium rhinotracheale ORT-UMN 88
Pathway
ori03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ori00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q785_11550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ori03400
]
Q785_11550
Enzymes [BR:
ori01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q785_11550
DNA repair and recombination proteins [BR:
ori03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Q785_11550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
SBP_bac_3
UB2H
Motif
Other DBs
NCBI-ProteinID:
AIQ00146
LinkDB
All DBs
Position
2305557..2308943
Genome browser
AA seq
1128 aa
AA seq
DB search
MPYLCLVLKEITIQQWYNEHQSSDLVHSLVQFVEKQAHSNLQIKGLVGSYFSLLTAAVFN
QTKKNILLIFNDTEEAAYTLNELESVFGKEKVLYFPASHRRPYEIEQTNNANVVLRTEVL
NKLANSTKTHIMVTTAQALTEKVVTKKTLNTKTQKIKVGEKLSVEFLNEVLFSYDFHRTD
FVTEPGEFSVRGGIVDIFSFSDDQPYRISFFGDEVESIRKFDLESQLSVEKVNSFTVIPN
MENKTLTEKRQSFLDFLPKSTLIFAKNLILSQDHIAKNFDLAQENFENLSGEIQHLSPED
LFNTAEEIENQLKNKFLIEFSHQTLFTPVDVFELHQSPQPTFNKQFELLIETLEQQHEQG
YKNYIFCSGEKQIQRFEEIFSDMGKEVHFTPVLGTLHEGYIHHDAKICCFTDHQIFERYH
RFNLRNKFSKSESITLKELTALQVGDYVTHIDHGVGKFGGLKRIDVNGKMQESIKLIYQD
NDVLYVSIHSLHKISKFNGKDGKEPKINKLGSPAWRNLKNKTKRKVKEVAFDLIKLYAKR
KMEKGFSFSPDTYLQNELEASFMYEDTPDQLKATEDVKADMESSRSMDRLVCGDVGFGKT
EVAVRAAFKAATDGKQVAILVPTTILAFQHYNTFKERLKDFPVRVEYLNRFRTTKEKNAI
LKDLEAGKIDIIIGTHQLVNNKIKYKDLGLLIIDEEHKFGVSVKDKLKTLRAHLDTLTLT
ATPIPRTLQFSLMAARDLSVIKTPPPNRQPVQTQIIGLNEEAIRDAVFYEIQRGGQVFVI
YNRIAGLQEMAGMLQRLIPEAKIAVGHGQMEGKKLEKILLDFMDGKYDILVSTTIVESGV
DVPNANTMLIVDAQNYGLAELHQMRGRVGRSNRKAFCYLITPPLVTLTNEARKRLQAIEQ
FSDLGSGFNIAMKDLEIRGAGNLLGAEQSGFMAEMGFDTYQKILNEAIEELKYSDDFKDL
FNDENQKQQDFVSDFNLDADTEILIPYEYVNNVEERMVLYQRLAEIETPEQLKAYTEELI
DRFGEMPAEVEELLESVELKWEAKKLGIEKIVLKQNKMLCYFISNPQSPFFETENFRKIP
AFIAQNPAICSLQEKKLKGNDFNTLILKISPIKSVGEAKQCLVNILNL
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgccgtatctttgtctcgttttgaaagaaattacaatccaacagtggtataatgagcat
caatctagcgatttggtgcattcgctcgtgcaatttgtagaaaaacaagcacatagcaat
ctgcaaatcaagggcttggtgggctcgtattttagtcttttgacggcggcggtttttaat
caaaccaagaaaaatatacttttaatctttaacgataccgaggaggcggcttatacactc
aacgaacttgaaagcgtgtttgggaaagaaaaagtgttatattttcccgcgtctcatcgt
cgtccttacgagattgaacagaccaataatgccaatgtggtgttgcgtaccgaagtgctc
aataaattagccaattcaaccaaaacacatattatggtaaccaccgcacaggcactgacc
gagaaggtagttaccaaaaaaacactgaacactaaaacgcagaaaatcaaagtaggagag
aagctttcggtagagtttttaaacgaagttttgttttcatatgattttcatcgcacggat
tttgtgactgagcctggcgaattttcagtgcgaggcggaattgtggatattttctcattt
tcagatgaccagccgtatagaatttcgttttttggtgatgaggtagaaagcatcagaaaa
ttcgatttagagagtcagctttcggtggagaaagtcaatagttttacggtgattcctaac
atggaaaacaaaaccttgaccgagaaaagacaatcttttttagactttttgcctaaaagc
actttgatatttgccaaaaatctgattttatcgcaagatcatattgccaaaaactttgat
ttagcccaagaaaattttgaaaatttatcgggagaaatccagcatttgtcgcccgaagat
ttatttaacacagcagaagagattgaaaatcagttaaaaaataaatttttaattgaattt
tcgcaccaaactttatttactccagttgatgtttttgagttgcaccaatcgccgcaacct
acctttaataaacaatttgaattgttgatagaaacccttgagcaacaacatgagcagggc
tataaaaactatattttttgttcgggagaaaagcaaattcagcgttttgaggaaatcttt
tcagacatgggcaaggaagtgcattttacgcctgttttaggcactttgcacgagggctat
attcatcatgatgctaagatttgttgctttaccgatcaccaaatttttgaacgctatcat
cgatttaatttaagaaataaattctctaaaagcgagagcattacgctcaaagagcttacg
gcattgcaagtgggcgattatgttacgcatatagaccacggcgtggggaaatttggcggg
ctcaagcgtatcgatgtcaatggtaaaatgcaggaaagcattaagcttatttatcaagac
aacgatgtgctgtatgtgagcattcactcgctgcataaaattagcaaattcaacgggaaa
gacggcaaagagccaaaaatcaataaattaggttcgcccgcatggcgaaatcttaaaaat
aaaactaaacgaaaagtaaaagaagtcgcctttgatttaattaagctttacgccaaacga
aaaatggaaaaaggctttagcttttcgccagatacatatttgcaaaacgagctggaggca
tcttttatgtacgaagacacgccagatcagctcaaagccaccgaagatgtaaaagccgat
atggaaagcagtcgttcaatggacaggctcgtgtgtggtgatgtaggttttggcaaaact
gaagtagcggtgcgtgcggcattcaaggcagcaaccgatggcaagcaagtggcgattttg
gtgcctacgactattttggcttttcagcattataacacatttaaagagcgtttaaaagac
tttcccgtgcgtgtggagtatcttaaccgatttagaaccaccaaggaaaaaaacgcaatt
ttaaaggatttagaagcggggaaaattgatatcattatcgggacacatcaattggtgaac
aataaaatcaagtataaagatttaggtttgctaattatagacgaggaacataaattcggg
gtgtctgtcaaagataaattaaagaccctgcgtgcgcatctggatacgcttacgcttacg
gcaacaccgattccgcgtactttgcaattctcgctgatggcagcacgagatttaagcgtg
attaaaacgccaccgcctaaccgccaacctgtgcaaacgcaaatcatagggctaaacgaa
gaggcgattagagatgcggtgttttacgaaattcagcgaggcggacaagtctttgtgatt
tacaaccgaatcgcaggtttgcaagaaatggcgggcatgcttcagcgattaatccctgag
gctaaaatcgccgtgggacacggacaaatggagggcaagaaattagaaaaaatcttgctc
gatttcatggatggtaaatacgatattctagtttctaccacgattgtggaaagtggtgta
gatgtgccgaatgccaatacaatgctgattgtagacgcgcaaaattatggtttggcagaa
ttacaccaaatgcgcggacgggtagggcgaagcaaccgaaaagccttttgctacctaatc
acgccgccgctggtaacgcttaccaacgaggcacgaaaaagattgcaagccatagagcaa
ttcagcgatttgggctcaggatttaatatagcgatgaaagatttggaaattcgtggtgca
gggaatttgctcggagcggaacaaagcggatttatggcagaaatgggatttgatacttat
caaaaaatcttgaacgaagccattgaagaattaaaatattccgatgatttcaaagattta
ttcaatgatgaaaatcaaaaacagcaagattttgtttcagattttaatttagatgccgac
accgaaattttgattccgtatgaatatgtgaacaatgttgaggagcgtatggtgctgtat
cagcgtttggctgaaatagaaacgcctgagcagctaaaggcttataccgaggaacttatc
gaccgatttggcgaaatgcctgccgaagtcgaggaattgcttgaatcggtagagttgaaa
tgggaggctaaaaaattaggcattgaaaaaattgttttaaaacagaataaaatgctttgt
tatttcattagcaatccgcagtctccattctttgaaaccgagaattttaggaagattcct
gcctttattgcacaaaatccagctatctgcagtttgcaagaaaaaaagctaaaaggcaat
gattttaatactttaattttaaaaatttcgcctataaaatcggtgggcgaagccaaacaa
tgtttggtcaatattttaaatctttaa
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