Ornithinimicrobium avium: DV701_10165
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Entry
DV701_10165 CDS
T05559
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
orn
Ornithinimicrobium avium
Pathway
orn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
orn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DV701_10165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
orn03400
]
DV701_10165
Enzymes [BR:
orn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DV701_10165
DNA repair and recombination proteins [BR:
orn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DV701_10165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AXH96435
UniProt:
A0A345NN27
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All DBs
Position
2214248..2215885
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AA seq
545 aa
AA seq
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MAGGRHTSRDGGRENAAPLETYRLMRDFGRTPEPSGGALLEAARQDGERVFVVQRHRATA
RHYDFRLEVDGVLASWAVPKGPSLDPETRRLAIHVEDHPMEYLHFEGVIPAGEYGGGDVI
VWDTGTWDSHDEDAAAAIRAGTLHVRLHGEKLRGEFMLVRTARQEGRKEQWLLFHKHDEH
AVEGWDAEDHPRSVLSGRTNEEVAADPDALWHSDRPVGEAAEPLRAPVPPPATEEELRAL
EELGASGTWEVFGRALRLTNLDKVLFPGRQGEEPVTKRELVRYAALVAPVSLPYLAGRAL
NLHRYPNGAERKGFWHKEVPEHAPEWLPRWDNPAADPGETQTYLVVDEPAALVWAANFGA
LEWHPWTSPTEAPDRPSYVMFDIDPGERTTWDETLELAQLHRTAFEHLGVRACPKVTGRR
GLQVWVPIRRGPTFEETRRWAEKVSRSIGAVVPELVSWKWSVKERGGLARLDYTQNAVNK
TLVAPYSPRPSPGAPVSTPITWEELDDPHLRPDRWTVRTVLDRLAEKGDLFSGVLHHDQT
LPRVK
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggcgggcgggcggcatacctcgagggacggcgggcgggagaacgcggcgccgctggag
acctaccggctgatgcgcgacttcgggcgcacccccgagccgagcggcggcgcgctgctg
gaggctgcacgtcaggacggcgagcgggtcttcgtcgtgcaacggcaccgggcgacggcg
cggcactacgacttccggctcgaggtcgacggtgtcctggccagctgggcggtgcccaag
ggaccctcgctggacccggagaccagacggctcgcgatccacgtcgaggaccacccgatg
gagtacctccacttcgagggggtcatcccggcgggcgagtacggcggcggggacgtcatc
gtctgggacaccggcacctgggactcccacgacgaggacgccgccgcggcgatccgcgcg
gggaccctccacgtgcgcctgcacggggagaagctgcgcggcgagttcatgctcgtgcgc
accgcccggcaggaagggaggaaggagcagtggttgctcttccacaagcacgacgagcac
gcggtcgagggctgggacgccgaggaccacccgcgctcggtgctcagcggccgcaccaac
gaggaggtcgctgccgaccccgacgcgctgtggcactccgaccggccggtcggggaggcc
gcggagccgctgcgggccccggtcccaccgcctgcgaccgaggaggagctgcgcgccctg
gaggagctgggcgcctccggcacgtgggaggtcttcggccgtgcgctgaggctcacgaac
ctcgacaaggtcctcttccccggccgccagggcgaggagccggtcaccaagcgcgagctc
gtcaggtatgccgcgctcgtcgccccggtctcgctgccgtacctggccggacgggcgctc
aacctgcaccgctacccgaacggcgcggagaggaagggcttctggcacaaggaggtgccc
gagcacgcgccggagtggctgccgcgctgggacaaccccgcggccgaccccggggagacg
cagacctacctggtggtcgacgagccggcggccctggtgtgggcggcgaacttcggggcc
ctggagtggcacccgtggacctcgccgaccgaggcgccggaccggccgtcctacgtgatg
ttcgacatcgaccccggcgagcggacgacgtgggacgagacgctggagctggcccagctg
caccggaccgccttcgagcacctgggggtgcgggcctgtcccaaggtgaccgggcggcgc
ggcctccaggtctgggtgccgatccgtcgggggccgaccttcgaggagacgcggaggtgg
gccgagaaggtgtcgcgctcgatcggggcggtcgtgcccgagctggtcagctggaagtgg
tcggtgaaggagcgcggtggtctcgcgcggctggactacacgcagaacgcggtcaacaag
acgctcgtggcgccgtactcaccacgcccgtcgcccggcgcaccggtgtcgacgccgatc
acgtgggaggagctggacgacccgcacctgcggcccgaccggtggacggtgcgcacggtg
ctggaccggctggccgagaagggcgacctgttctccggcgtgctgcaccacgaccagacg
ctgccgcgcgtgaagtga
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