Ornithinimicrobium avium: DV701_15335
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Entry
DV701_15335 CDS
T05559
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
orn
Ornithinimicrobium avium
Pathway
orn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
orn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DV701_15335 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
orn03400
]
DV701_15335 (mfd)
Enzymes [BR:
orn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DV701_15335 (mfd)
DNA repair and recombination proteins [BR:
orn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DV701_15335 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AXH97304
UniProt:
A0A345NQJ6
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All DBs
Position
3340580..3344182
Genome browser
AA seq
1200 aa
AA seq
DB search
MHLSPVVDLLCADPAAARVLEAARSGEPVVEVSAAAGAHPALVAALARADQAPLLAVTAT
GREADDLVAALGSLLEEGPSAVAAFPSWETLPHERLSPRSDTVGRRLATLRRLAHPDPQD
EQAGPVRVVVASVRALLQPLVRGLGDLVPVRLRAGDERPLSEVVDALAAAAYTRTDMVER
RGEFAVRGGILDVFPPTEEHPVRVEFWGDTVEEVRWFKVADQRSLEMVGQEHGLYAPPCR
ELLLTDDVRERARELVGSLPGAADLLAKVAEGIAVEGMESLSPVLVDGMETVVDVLPAGS
RVVVVEPERVRTRGHDLVATSREFLEASWAAAATVEGAAPIDLQRALGTASSWELGDMRE
HTLATGRAWWSLTSFAVDTELAGDDTLEVPSSPVNSYRGDREAIFADLRSWLGERRRVLV
SLDGPGMARRVAEILGENDIPQRLESELTSAEVLSPDRITLTTGAVGHGFVLPGAGFVLV
GEADLIGQSSTGGSTRDMRRMPSRRRQQVDPLALRPGDYVVHEQHGVGRFVEMVQRQVQG
ATREYVVLEYASSKPRGHGIPDRLYLPTDQLDQLTKYVGGEAPTLNRLGGSDWQKTKSRA
RKHIKQIAAELIRLYSARMASQGHAFAPDTPWQRELEDAFAFTETPDQLSSIEEVKEDME
KPVPMDRLISGDVGYGKTEIAVRAAFKAIQDGKQVAVLVPTTLLVQQHFQTFSERYAQYP
VTVRSLSRFQSDKDARETVAGLADGSVDVVIGTHRLLGSTVRFKDLGLVIIDEEQRFGVE
HKEQLKALRTDVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGGYDEKQ
IAAAVRRELLREGQVFFVHNKVSSIEKAASRLRELVPEARIATAHGQMGEHRLEEVVVDF
WERRFDVLVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRGRERAYAYFLYP
PEKPLTETAVDRLQTIAANTDLGSGIAVAMKDLEIRGAGNLLGGEQSGHIEGVGFDLYVR
MVGEAVARFKGEGEEAPAEVKIELPVDAHLPHDYVPGERLRLEAYRKLAQVTDEAELAQI
REELVDRYGEPPVPVQTLLEVARLRTVARAAGVADVGVQGKMIRFAPVEGLRESQQLRLN
RLYPGTIIKPALRQVLVPAPTTARVGGKPLRDGAVLEWASQLLRAVLLDDIAAAAGGSVG
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgcacctctcacccgtcgtcgacctgctctgcgccgatcccgccgccgcgcgggtgctc
gaggccgcccgctccggcgagccggtcgtcgaggtgtccgccgcggccggcgcccacccg
gcgctggtggcggcgctcgcccgcgcggaccaggccccgctgctggcggtgacggccacc
gggcgggaggccgacgacctcgtcgccgcgctcggctcgctcctcgaggagggaccgtcc
gcggtcgcggccttccccagctgggagacgctgccgcacgagcggctcagcccgcgctcg
gacaccgtcggccggcggctggccaccctgcgccggctcgcgcacccggacccgcaggac
gagcaggcgggcccggtccgggtcgtcgtcgcctcggtgcgcgcgctgctccagccgctc
gtcagggggctgggcgacctcgtcccggtccggctgcgcgccggtgacgagcggccgctg
tcggaggtcgtcgacgcgctggcggccgcggcctacacccgcaccgacatggtcgagcgc
cgcggcgagttcgccgtgcgcggcgggatcctcgacgtcttcccgcccaccgaggagcac
ccggtgcgcgtcgagttctggggcgacaccgtcgaggaggtgcgctggttcaaggtcgcc
gaccagcgctcgctggagatggtcggccaggagcacgggctctacgccccgccctgccgc
gagctgctgctcaccgacgacgtccgcgagcgggcgcgcgagctcgtcggcagcctcccg
ggcgccgcggacctgctggccaaggtcgccgagggcatcgcggtcgagggtatggagtcg
ctctcgccggtcctcgtcgacggcatggagacggtcgtggacgtgctgcccgcgggctcc
cgggtcgtcgtcgtggagcccgagcgggtgcgcacccgcgggcacgacctggtcgccacc
agccgggagttcctcgaggccagctgggcggctgcggcgaccgtcgagggcgcggccccg
atcgacctgcagcgcgccctgggcacggcgtcctcgtgggagctgggcgacatgcgcgag
cacacgctggccaccgggcgggcgtggtggtcgctgacctccttcgcggtcgacaccgag
ctggccggggacgacaccctcgaggtgccgagctccccggtgaactcctaccgcggcgac
cgggaggcgatcttcgccgacctgcgctcctggctgggcgagcgccggcgggtgctcgtc
agcctggacgggcccggcatggccaggcgggtggccgagatcctgggcgagaacgacata
cctcagcggctggagagcgagctgacctccgcggaggtgctgagcccggaccggatcacg
ctgaccaccggcgccgtggggcacggcttcgtcctgccgggtgccggcttcgtgctcgtg
ggggaggcggacctgatcggccagtcgtccacggggggctcgacgcgggacatgcgccgg
atgccctcgcgccgccgccagcaggtcgacccgctcgcgctgcgtcccggcgactacgtc
gtgcacgagcagcacggcgtgggccggttcgtggagatggtccagcgtcaggtccaggga
gcgacgcgggagtacgtcgtgctggagtacgcgagctccaagccgcgcgggcacggcata
ccggaccggctgtacctgccgaccgaccagctggaccagctgaccaagtacgtcggcggc
gaggcccccaccctgaaccggctgggcggctcggactggcagaagaccaagagccgggcg
cgcaagcacatcaagcagatcgcggccgagctgatccggctctactcggcgcggatggcc
agccaggggcacgcgttcgccccggacacgccgtggcagcgcgagctcgaggacgccttc
gccttcaccgagacccccgaccagctctcctcgatcgaggaggtcaaggaggacatggaa
aagccggtcccgatggaccggctgatcagcggcgacgtcggctacggcaagaccgagatc
gcggtgcgggcggcgttcaaggcgatccaggacggcaagcaggtcgcggtgctcgtgccg
acgacgctgctggtgcagcagcacttccagaccttctccgagcgctatgcgcagtacccc
gtcaccgtgcgctcgctgtcgcgcttccagtcggacaaggacgccagggagacggtcgcg
gggctggccgacggctcggtcgacgtggtgatcggcacgcaccggctcctcggctccacc
gtgcgcttcaaggacctcggcctggtcatcatcgacgaggagcagcgcttcggcgtcgag
cacaaggagcagctcaaggcgctgcgcaccgacgtcgacgtgctggccatgtcggccacg
cccatcccgcgcaccctggagatggcggtgaccggcatccgggagatgtcgacgctggcc
acgcccccggaggagcggcacccggtcctgaccttcgtcggcggctacgacgagaagcag
atcgccgcggcggtgcggcgcgagctgctgcgggagggccaggtcttcttcgtgcacaac
aaggtgagctcgatcgagaaggccgcctcccggctgcgcgagctggtcccggaggcccgg
atcgccacggcccacgggcagatgggcgagcaccggctggaggaggtcgtcgtcgacttc
tgggagcggcgcttcgacgtcctggtctgcaccacgatcgtggagaccggcctggacatc
tccaacgccaacaccctcatcgtcgagcgggccgacaccttcgggctctcccagctgcac
cagctgcgcggacgcgtgggccgcggccgcgagcgcgcctacgcctacttcctctacccg
ccggagaagccgctgaccgagaccgccgtcgaccgcctgcagacgatcgcggccaacacc
gacctcggctcgggcatcgccgtggcgatgaaggacctggagatccgcggtgccggcaac
ctgctcggcggcgagcagtccggccacatcgagggggtcggcttcgacctctacgtgcgg
atggtcggcgaggccgtcgcccggttcaagggagagggcgaggaggcgccggccgaggtc
aagatcgagctgccggtcgacgcgcacctgccgcacgactacgtgccgggggagcggctg
cggctggaggcctaccgcaagctggcgcaggtcaccgacgaggccgagctggcgcagatc
cgcgaggagctcgtggaccggtacggcgaaccgccggtcccggtgcagaccctgctggag
gtggcgcggctgcggacggtggcccgcgccgcgggggtcgccgacgtgggcgtgcagggc
aagatgatccgcttcgcccccgtcgaggggctgcgggagagccagcagctgcggctcaac
cggctctaccccgggacgatcatcaagccggctctgcgccaggtcctggtgcccgcgccg
acgaccgcgcgcgtgggcggcaagccgctgcgcgacggcgcggtcctcgagtgggcctcc
cagctgctgagggccgtcctgctggacgacatcgcggccgccgcgggcggaagcgtcggc
tga
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