Occallatibacter riparius: MOP44_21255
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Entry
MOP44_21255 CDS
T08486
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
orp
Occallatibacter riparius
Brite
KEGG Orthology (KO) [BR:
orp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MOP44_21255 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
orp03400
]
MOP44_21255 (ligD)
Enzymes [BR:
orp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MOP44_21255 (ligD)
DNA repair and recombination proteins [BR:
orp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MOP44_21255 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
FAD-oxidase_C
Motif
Other DBs
NCBI-ProteinID:
UWZ83086
UniProt:
A0A9J7BQ70
LinkDB
All DBs
Position
5218377..5221091
Genome browser
AA seq
904 aa
AA seq
DB search
MTTSAKSRSQSAKAVDRQLARYREMRDFHITAEPRGDGAPATKTNALPFVVQKHSATRLH
YDFRLGWNGVLKSWAVTKGPSYYTGDKRLAVEVEDHPMEYGGFEGSIPKGQYGGGTVMVW
DFGEWEPLGDVDKQLAEGNLKFVLKGTKLKGKWALIRMKPNPERDRSGKPNWLLLKERDE
YAQHEEGPSITELAPNSALTKRSIEEIAASEDHVWDSRSGLRKSEDNGARKSPAQKAKTQ
DRKVKSLDKLLKDIPRESYPGFIPPQLAEQSRSSPSGNDWVHELKLDGYRTQIHVRASTQ
KGGPTKARIFTRKGLDWTARMPRLAEAAATLGVESAILDGELVVLDHSGKSSFSDLQAAF
QESKKVDLVYFAFDILHLNGHNLRGLPLLKRKEILQKLLPPDDPTLRFSEHIRSDGEHVF
QKACELGAEGIVSKQVAAPYISGRGNTWLKRKGSLRQEFVIGGFTPVSTTGRGVGALVLG
YYDDKGKLIYAGRTGTGFSQATERMLRVRLDALVQKAPSFAELPREARENATWVKPELVA
EVHFASWTKDNLIRQSSFKGLREDKPANEVVRETSFADVAPSTSPVRSSVKHAPAKAAPK
AARSVPKPDLPIPISRPDKVLDETSGMTKQDLAEYLVAVADRMLPHIADRPISILRLPNG
VGKQSFFQRHVSAGLPPGVHTIPVASRKTGEHTDYLYLNSVEGLVGMAQMGVLEIHPWGS
KIDNVDKPDRIIFDLDPDEAIPWSTLSEAAFDIRSRLKRLGLTSYVKSTGGKGLHVVIAI
EPEHGWATIKQFAHNVVLQMEKDNPSLYLTKMSKAARKNHIYLDYLRNDRESTAVAPFST
RARPGVPVAVTLDWKEIKADSRPVFHVCDLDQWRARLRKDPWKEMLTSPQRLTKEMLLSA
GVKL
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgacgacctccgcgaaatcccgctctcagtcggccaaggcggtcgaccgccagctcgcg
cgttatcgcgagatgcgtgacttccacatcaccgcggagccgcgcggcgacggcgcacca
gccacgaagaccaatgcgttgccgtttgtagtgcaaaagcactccgccacgcgccttcat
tacgacttccgcctcggctggaacggagtgctcaagagctgggcagtcaccaagggcccc
agctactacaccggcgacaagcgcctcgctgtcgaagtggaagaccaccccatggaatac
ggcggcttcgaaggcagcatccccaaaggccagtacggtggcggcaccgtcatggtgtgg
gacttcggggagtgggaaccccttggagatgtcgacaagcagctggccgagggcaacctg
aaattcgtgttgaagggaaccaagctaaaagggaagtgggcgctcattcgcatgaaaccc
aatccggagcgcgaccgttccggcaagccgaactggctcctgctcaaggagcgcgacgaa
tacgcgcagcacgaagaaggcccgtccatcacggaactcgcccccaacagcgcgctaacc
aagcgctccattgaagagatcgccgcaagcgaagatcacgtgtgggattcgcggagcggc
cttcgcaaatccgaagacaacggcgcgcgcaagtcgccggcgcaaaaagccaaaacgcag
gaccggaaagtcaagtccctcgacaagctgctgaaggacatcccgcgcgaaagctatccg
ggattcattccgccgcagcttgccgaacaatcgcgctcatcgccctcgggcaacgattgg
gtccacgaactcaagctcgacggataccgcacccagatccacgtgcgcgcttccacacaa
aagggcggaccaaccaaggcgcgcatcttcacccgcaaaggccttgactggaccgcgcgc
atgcccaggctcgcagaggccgcggcaacgctgggtgtcgaaagcgccatactcgacggc
gaattagtcgtgctcgaccacagcggcaaaagcagcttctccgatctgcaggccgcgttt
caggaaagtaaaaaagttgacctcgtttacttcgccttcgacatcctccatctgaacggc
cacaacctgcgcggcctgcctctgctcaaacgcaaagagattctccaaaagcttctaccg
cctgacgatccaaccctgcgcttctcggaacacatccgcagcgatggcgagcatgtattc
caaaaagcctgcgagctcggcgccgaaggaatcgtctccaagcaagtcgcggctccctac
atctccggccgcggtaacacatggctcaaacggaagggaagtctcaggcaggagttcgtc
atcggcggattcactccggtttcaactacaggccgcggtgtgggcgctttggtgcttggc
tactacgacgacaagggcaagctcatctacgctggccgcactggcacgggcttctcccaa
gcaacggagcgcatgctgcgcgtccgcctcgatgcgctcgtgcagaaggcgcccagcttc
gctgaactgccgcgtgaagcccgcgagaacgccacctgggtcaagcccgaactcgtcgcc
gaagttcatttcgcgtcgtggaccaaggacaatctgatccgccagtcctccttcaaaggc
cttcgcgaagacaagcccgcaaacgaggttgtccgcgaaacatcgtttgccgatgtcgcg
ccgtctacttctcctgtgaggtcctcggtgaaacacgcccccgccaaagctgctcccaaa
gcagccagatcagttccaaagcccgatctccccatccccatctcgcggcccgacaaagtg
cttgacgaaaccagcggcatgacgaagcaggaccttgctgagtatctcgtcgcagtagcc
gaccgcatgctcccccacatcgccgatcgccccatcagcatcctgcgtctccctaacgga
gtcggcaaacaatcattctttcagcgccacgtcagcgcgggccttcctcccggcgttcac
accattcccgtggccagcagaaaaaccggcgaacacaccgactatctctacctgaactcc
gttgagggtctcgtcggcatggcgcagatgggcgtcctcgaaattcacccttggggatcg
aagattgacaacgtcgacaagcccgatcgcatcatcttcgacctcgaccccgacgaggcg
atcccctggtccacactctccgaggccgcattcgacatccgctcgcgcctcaagcgcctc
ggcctcacaagttacgtgaagagcaccggcggcaaaggcctgcacgtcgtcatcgccatc
gagccggaacacggctgggccaccatcaagcagttcgcgcacaacgtcgttctccaaatg
gagaaggacaatccgagcctctacctcaccaagatgtcgaaggccgcgcgcaaaaaccat
atctacctcgactaccttcgcaacgaccgcgaatccaccgccgtcgcgccattctcaacc
cgcgcgcgccccggcgtccccgtcgccgtcacgctcgactggaaggaaatcaaggcggac
tctcgcccggtcttccacgtctgcgatctcgaccagtggcgcgcccgactgcgcaaagac
ccgtggaaggaaatgctcacctcgccgcaacgtctaaccaaagaaatgcttctatctgca
ggtgtgaagctttga
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