KEGG   Occallatibacter riparius: MOP44_21255
Entry
MOP44_21255       CDS       T08486                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
orp  Occallatibacter riparius
Brite
KEGG Orthology (KO) [BR:orp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MOP44_21255 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:orp03400]
    MOP44_21255 (ligD)
Enzymes [BR:orp01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MOP44_21255 (ligD)
DNA repair and recombination proteins [BR:orp03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MOP44_21255 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase mRNA_cap_enzyme FAD-oxidase_C
Other DBs
NCBI-ProteinID: UWZ83086
UniProt: A0A9J7BQ70
LinkDB
Position
5218377..5221091
AA seq 904 aa
MTTSAKSRSQSAKAVDRQLARYREMRDFHITAEPRGDGAPATKTNALPFVVQKHSATRLH
YDFRLGWNGVLKSWAVTKGPSYYTGDKRLAVEVEDHPMEYGGFEGSIPKGQYGGGTVMVW
DFGEWEPLGDVDKQLAEGNLKFVLKGTKLKGKWALIRMKPNPERDRSGKPNWLLLKERDE
YAQHEEGPSITELAPNSALTKRSIEEIAASEDHVWDSRSGLRKSEDNGARKSPAQKAKTQ
DRKVKSLDKLLKDIPRESYPGFIPPQLAEQSRSSPSGNDWVHELKLDGYRTQIHVRASTQ
KGGPTKARIFTRKGLDWTARMPRLAEAAATLGVESAILDGELVVLDHSGKSSFSDLQAAF
QESKKVDLVYFAFDILHLNGHNLRGLPLLKRKEILQKLLPPDDPTLRFSEHIRSDGEHVF
QKACELGAEGIVSKQVAAPYISGRGNTWLKRKGSLRQEFVIGGFTPVSTTGRGVGALVLG
YYDDKGKLIYAGRTGTGFSQATERMLRVRLDALVQKAPSFAELPREARENATWVKPELVA
EVHFASWTKDNLIRQSSFKGLREDKPANEVVRETSFADVAPSTSPVRSSVKHAPAKAAPK
AARSVPKPDLPIPISRPDKVLDETSGMTKQDLAEYLVAVADRMLPHIADRPISILRLPNG
VGKQSFFQRHVSAGLPPGVHTIPVASRKTGEHTDYLYLNSVEGLVGMAQMGVLEIHPWGS
KIDNVDKPDRIIFDLDPDEAIPWSTLSEAAFDIRSRLKRLGLTSYVKSTGGKGLHVVIAI
EPEHGWATIKQFAHNVVLQMEKDNPSLYLTKMSKAARKNHIYLDYLRNDRESTAVAPFST
RARPGVPVAVTLDWKEIKADSRPVFHVCDLDQWRARLRKDPWKEMLTSPQRLTKEMLLSA
GVKL
NT seq 2715 nt   +upstreamnt  +downstreamnt
atgacgacctccgcgaaatcccgctctcagtcggccaaggcggtcgaccgccagctcgcg
cgttatcgcgagatgcgtgacttccacatcaccgcggagccgcgcggcgacggcgcacca
gccacgaagaccaatgcgttgccgtttgtagtgcaaaagcactccgccacgcgccttcat
tacgacttccgcctcggctggaacggagtgctcaagagctgggcagtcaccaagggcccc
agctactacaccggcgacaagcgcctcgctgtcgaagtggaagaccaccccatggaatac
ggcggcttcgaaggcagcatccccaaaggccagtacggtggcggcaccgtcatggtgtgg
gacttcggggagtgggaaccccttggagatgtcgacaagcagctggccgagggcaacctg
aaattcgtgttgaagggaaccaagctaaaagggaagtgggcgctcattcgcatgaaaccc
aatccggagcgcgaccgttccggcaagccgaactggctcctgctcaaggagcgcgacgaa
tacgcgcagcacgaagaaggcccgtccatcacggaactcgcccccaacagcgcgctaacc
aagcgctccattgaagagatcgccgcaagcgaagatcacgtgtgggattcgcggagcggc
cttcgcaaatccgaagacaacggcgcgcgcaagtcgccggcgcaaaaagccaaaacgcag
gaccggaaagtcaagtccctcgacaagctgctgaaggacatcccgcgcgaaagctatccg
ggattcattccgccgcagcttgccgaacaatcgcgctcatcgccctcgggcaacgattgg
gtccacgaactcaagctcgacggataccgcacccagatccacgtgcgcgcttccacacaa
aagggcggaccaaccaaggcgcgcatcttcacccgcaaaggccttgactggaccgcgcgc
atgcccaggctcgcagaggccgcggcaacgctgggtgtcgaaagcgccatactcgacggc
gaattagtcgtgctcgaccacagcggcaaaagcagcttctccgatctgcaggccgcgttt
caggaaagtaaaaaagttgacctcgtttacttcgccttcgacatcctccatctgaacggc
cacaacctgcgcggcctgcctctgctcaaacgcaaagagattctccaaaagcttctaccg
cctgacgatccaaccctgcgcttctcggaacacatccgcagcgatggcgagcatgtattc
caaaaagcctgcgagctcggcgccgaaggaatcgtctccaagcaagtcgcggctccctac
atctccggccgcggtaacacatggctcaaacggaagggaagtctcaggcaggagttcgtc
atcggcggattcactccggtttcaactacaggccgcggtgtgggcgctttggtgcttggc
tactacgacgacaagggcaagctcatctacgctggccgcactggcacgggcttctcccaa
gcaacggagcgcatgctgcgcgtccgcctcgatgcgctcgtgcagaaggcgcccagcttc
gctgaactgccgcgtgaagcccgcgagaacgccacctgggtcaagcccgaactcgtcgcc
gaagttcatttcgcgtcgtggaccaaggacaatctgatccgccagtcctccttcaaaggc
cttcgcgaagacaagcccgcaaacgaggttgtccgcgaaacatcgtttgccgatgtcgcg
ccgtctacttctcctgtgaggtcctcggtgaaacacgcccccgccaaagctgctcccaaa
gcagccagatcagttccaaagcccgatctccccatccccatctcgcggcccgacaaagtg
cttgacgaaaccagcggcatgacgaagcaggaccttgctgagtatctcgtcgcagtagcc
gaccgcatgctcccccacatcgccgatcgccccatcagcatcctgcgtctccctaacgga
gtcggcaaacaatcattctttcagcgccacgtcagcgcgggccttcctcccggcgttcac
accattcccgtggccagcagaaaaaccggcgaacacaccgactatctctacctgaactcc
gttgagggtctcgtcggcatggcgcagatgggcgtcctcgaaattcacccttggggatcg
aagattgacaacgtcgacaagcccgatcgcatcatcttcgacctcgaccccgacgaggcg
atcccctggtccacactctccgaggccgcattcgacatccgctcgcgcctcaagcgcctc
ggcctcacaagttacgtgaagagcaccggcggcaaaggcctgcacgtcgtcatcgccatc
gagccggaacacggctgggccaccatcaagcagttcgcgcacaacgtcgttctccaaatg
gagaaggacaatccgagcctctacctcaccaagatgtcgaaggccgcgcgcaaaaaccat
atctacctcgactaccttcgcaacgaccgcgaatccaccgccgtcgcgccattctcaacc
cgcgcgcgccccggcgtccccgtcgccgtcacgctcgactggaaggaaatcaaggcggac
tctcgcccggtcttccacgtctgcgatctcgaccagtggcgcgcccgactgcgcaaagac
ccgtggaaggaaatgctcacctcgccgcaacgtctaaccaaagaaatgcttctatctgca
ggtgtgaagctttga

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