Ornithinimicrobium ciconiae: FNH13_16685
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Entry
FNH13_16685 CDS
T06094
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
orz
Ornithinimicrobium ciconiae
Pathway
orz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
orz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FNH13_16685 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
orz03400
]
FNH13_16685 (mfd)
Enzymes [BR:
orz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FNH13_16685 (mfd)
DNA repair and recombination proteins [BR:
orz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FNH13_16685 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
LSDAT_prok
RecG_dom3_C
AroM
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
QDO89769
UniProt:
A0A516GE19
LinkDB
All DBs
Position
complement(3603768..3607373)
Genome browser
AA seq
1201 aa
AA seq
DB search
MSLTPVRAALVSDPGAAAVLTAAADREALVDVAVAAGARPALVASLAGSAPLLAVTATGR
EADDLAAALGEFLPAEDVVTFPSWETLPHERLSPRSDTVGQRLAVLRRLTHPQPDEPEHG
PARVIVASARAMLQPFVAGLGDLVPVQLRAGETHDFEETIAALAAAAYVRTDLVERRGEF
SVRGGILDIFPPTEEHPLRVEFWGDTVEEIRWFKVADQRSLEIADGGLWAPPCRELLLTD
EVRARAADLAEQLPGVGDLLGKLAEGIAVEGMESLAPVLVDAMETLLDVLPERTNVVLFD
PERIRTRAHDLVQTSEEFLGASWAAAAGGATGSSGPVDLQEVLGGASYWSLGDMRARALE
LDHSWWTFTAFVGDEELAEFTEDSDDDVARTITVDSSPVEAFRSDTEAIVAALRGWLADG
QRVVVSLEGPGLARRVSEVLAESDIPHRLSSPLGALDPDIVQVTTGTVGRGFALPGAKLV
LVGEADLTGQVSTVGTTRDMRRMPSRRRAQVDPLQLRPGDFVVHEQHGVGRFVEMAQRQV
QGAVREYLVLEYASAKRGQPADRLYVPTDQLDQITKYVGGEAPSLNRLGGADWQKTKSRA
KKHVKQIAAELIRLYSARMATQGYAFGPDTPWQRELEDAFAFVETTDQLSSIEEVKADME
KPVPMDRLISGDVGYGKTEIAVRAAFKAIQDGKQVAILVPTTLLVQQHFETFTERYAQYP
VVVRALSRFQSDKEAKEVIKGLAEGSVDLVIGTHRILSTGVTFKDLGLVVIDEEQRFGVE
HKEQLKALRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGGYDERQ
IAAAIRRELLRDGQVFFLHNKVRSIDKVASRIRELVPEARVATAHGQMGEHQLEKVVLDF
WEGNFDVMVCTTIVETGLDISNANTLIVDRADQFGLSQLHQLRGRVGRGRERAYAYFTYP
PEKPLTETAVERLQTIATNTDLGSGMAVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVR
LVSDAVAGFKGELDESPAEIKIELPVDAHLPHEYIPGERLRLEAYTKLAKVTDEDELAEI
EAELVDRYGTPPEPVQNLLEVARLRTLARKAGVSDISVQGQSIRFGPVELRESQQLRLNR
LFPGTIIKAATRTVLVPAPKTARVGGKVVRDKAILDWASVLIRQVMLDDLTAVGASGSVT
R
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
gtgagtctcaccccagtgcgcgcggccctggtcagcgaccccggagctgcggcggtcctg
accgccgcagcggaccgtgaggcgctcgtcgacgttgcggtcgcagccggtgcccgcccg
gccctggtggcctccctggcaggcagtgccccgctgctggcggtgaccgccaccggccgg
gaggccgacgacctggccgcggcgctgggtgagttcctccccgccgaggacgttgtgacc
tttccgagctgggagaccctgccgcacgagcggctcagcccccgcagcgacaccgtgggc
cagcgtctggcggtcctgcgacggttgacgcacccgcagcccgacgagccggaacacggt
ccggcgcgggtgatcgtggcctcggcacgggcgatgctgcagcccttcgtcgccgggctc
ggggatctggtgccggtccagctgcgggcgggggagacccacgacttcgaggagaccatc
gcggcgctcgcggcggccgcctacgtgcgcaccgacctggtcgagcgccgcggtgagttc
tcggtgcgcggcggcatcctcgacatcttcccgccgaccgaggaacacccgttgcgcgtg
gagttctggggcgacacggtggaggagatccgttggttcaaggtcgctgaccagcgctcc
ctggagatcgcggacggtggcctgtgggctccgccgtgccgggagctgctgctcacggac
gaggtgcgcgcccgggccgccgacctggccgagcagctgcccggggtcggggacctgctg
ggcaagctcgccgaggggatcgcggtcgagggcatggagtcgctggcgcccgtgctggtc
gatgcgatggagaccctgctcgatgtgctcccggagcgcaccaacgtcgtcctcttcgac
ccggagcggatccgcacccgcgcgcacgacctggtgcagaccagcgaggagttcctgggg
gccagctgggcggcggccgcaggtggcgccaccgggtcatccggtccggtcgacctgcag
gaggtgctcggcggggcgtcctactggtcgctgggtgacatgcgggcacgcgcgctcgag
ctggatcacagctggtggaccttcacagccttcgtcggtgacgaggagctcgcggagttc
accgaggacagcgatgacgacgtcgcccgcacgatcacggtcgactccagcccggtcgag
gcgttccgcagcgacaccgaggcgatcgtggcggcgctgcgcggctggctcgccgacggc
cagcgggtcgtcgtctcgctggagggccccggcctggcgcgccgggtcagcgaggtgctc
gccgagagtgacatcccgcaccggctcagctccccgctgggggcgttggaccccgacatc
gtgcaggtcaccacgggcaccgtcgggcgggggttcgcgctgcctggtgccaagctggtg
ctggtcggcgaggccgacctgaccggccaggtcagcaccgtgggcacgaccagggacatg
cggcggatgccgtcgcgccggcgggcgcaggtcgacccgttgcagctgcggcccggtgac
ttcgtggtgcacgagcagcacggcgtcggccggtttgtggagatggcgcagcggcaggtg
cagggggccgtgcgcgaatacctcgtgctggaatacgcctcggccaagcgaggtcagccg
gccgaccggttgtacgtccccaccgaccagctcgaccagatcacgaagtatgtcggcggc
gaggcgccgtcgctgaaccgcctgggcggtgccgactggcagaagacgaagtcgcgcgcc
aagaaacacgtcaagcagatcgctgccgagctgatccgcctctacagcgcgcggatggcg
acgcagggctatgcgtttggtccggacactccgtggcagcgcgagctcgaggacgccttc
gccttcgtggagaccaccgaccagctctccagcatcgaggaggtcaaggccgacatggaa
aagcccgtcccgatggaccggctgatctccggtgacgtgggctacggcaagacggagatc
gcggtgcgggccgccttcaaggcgatccaggacggcaagcaggtcgcgatcctggtgccg
accacgctgctggtgcagcaacacttcgagacgttcaccgagcgctatgcacaatatccg
gtggtcgtgcgggccctgtcgcgcttccagtcggacaaggaggccaaggaggtcatcaag
ggcctggccgagggcagcgtcgacctggtgattggcacgcaccgcatcctctcgaccggg
gtgaccttcaaggacctcggactggtcgtgatcgacgaggagcagcgcttcggcgtcgag
cacaaggagcagctcaaggcgctgcgcaccaacgtcgacgtgctcgcgatgtcggccacc
ccgatcccgcggaccctggagatggcggtcaccggcatccgggagatgtccacgctggcc
accccacccgaggagcggcacccggtgctgacgttcgtcggaggctatgacgagcggcag
atcgctgcggcgatccggcgagaactgctccgtgatgggcaggtcttcttcctgcacaac
aaggtccgctcgatcgacaaggtcgccagccgcatccgcgagctggtcccggaggcgcgg
gtggcgacggcccacggtcagatgggcgagcaccagctggagaaggtggtgctcgacttc
tgggagggcaacttcgacgtgatggtgtgcaccacgatcgtggagaccgggctggacatc
tccaacgccaacaccctcatcgtcgaccgggccgaccagttcggcctctcccagctgcac
cagctgcgggggcgggtgggccgtggccgggagcgggcctacgcctacttcacctatcca
cccgagaagccgctgaccgagaccgcggtggagcggctgcagaccatcgccacgaacacc
gacctcggctccggcatggcggtggcgatgaaggacctggagatccgcggcgcgggcaac
ctgctcggtggcgagcagtccggccacatcgccggcgtcgggttcgacctctatgtccgg
ctcgtcagcgatgccgtcgccggcttcaagggtgagctggacgagtcaccggccgagatc
aagatcgagctgccggtcgacgcgcacctgccgcacgaatacatccccggtgagcggttg
cggctggaggcctacaccaagctggccaaggtcacggacgaggacgagcttgccgagatc
gaggccgagctggtcgaccgctatggcacgcctccggagccggtgcagaacctcctggag
gtcgcacggctgcggaccctggcccgtaaggcaggcgtcagtgacatctccgtgcagggg
cagagcatccgcttcggtccggtggagctgcgcgagagccagcagctgcggctcaaccgg
ctgttccccggcacgatcatcaaggccgcgacccggaccgtcctggtgccggcgcccaag
accgcccgggtgggcggaaaggtggtgcgggacaaggcaattcttgattgggcaagcgtg
ctgatccggcaggtcatgctggacgacctgacggccgtgggggcctcaggcagcgtgaca
cgatga
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integrated database retrieval system
