Oryza sativa japonica (Japanese rice) (RefSeq): 107278493
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Entry
107278493 CDS
T01015
Name
(RefSeq) polygalacturonase-like
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa00040
Pentose and glucuronate interconversions
osa01100
Metabolic pathways
Module
osa_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107278493
Enzymes [BR:
osa01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
107278493
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
NosD
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
107278493
NCBI-ProteinID:
XP_015645892
UniProt:
Q84ZP3
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Position
7:complement(5812025..5813917)
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AA seq
405 aa
AA seq
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MASTVLIVSASLLALFFFLHSADADVGSNVFSIQSYGAHGDGRHDDTKALGDTWAAACSS
AKPAVLLIPKGKKYLIKHTTLSGPCKSSISLMVKGSLVASPERSDWSKETIRHWILISGV
TGLTVTGGGTIDGNGKIWWQNSCKTNSKLPCTEAPTALTFYSCKNLKVEYLKVVNSQQIQ
ISVEDCTDVMVSRLSITAPETAPNTDGIHITRSRDVEVTDCMIKTGDDCMSIEDGTENLH
VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTANGARIKTWQGGKGSAKNIVF
QNMVMDNVWNPIIIDQNYCDSSTPCKQQKSAVEVSNVLFKNIRGTSASEEAIMLHCSSSV
PCHGITLENVNLTVKGGSSNAKSTCQNAEWKKSGSVSPQPCGFRN
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggcctccactgtgctcattgtctctgcatctctccttgcactcttcttcttcttgcat
agtgctgatgcagatgttggcagtaatgtgttcagcatacagagctacggggctcatgga
gacggacgacatgatgacaccaaagcattgggagatacatgggctgcagcttgctcctct
gcaaaacctgcagttttgctcatccccaagggcaagaaatacctgatcaagcacacaaca
ctgtctggtccatgcaaatcaagcatctcattgatggtgaagggtagtttggtggcttct
ccagagaggtcagactggagcaaggagaccataaggcactggattctgatcagtggtgtc
actggtcttactgtcactggtggtgggaccatagatggaaatggcaagatttggtggcaa
aattcatgcaaaaccaactcaaagcttccatgcacagaagctccaacggcactgacattc
tactcctgcaagaatctgaaggtagagtatctgaaggtggtgaacagccagcaaatccag
atttcagtggaggattgcaccgatgtgatggtgtctcgcctgtcgatcacagcaccagaa
acagccccaaacactgatggaatccatatcacacgcagcagagatgttgaggtgacagac
tgcatgatcaagaccggggatgactgcatgtcaatcgaggacggaaccgagaacctgcat
gtcaagaacatggtgtgtggaccgggacacggcatcagcatcggtagcttgggtgatcat
aattctgaagctcatgtcaacaatgtcaccgtcgacaatgtcaggttgtatggcacagcc
aacggagctcgcatcaagacatggcagggaggaaagggttcagcgaagaacatcgtgttc
cagaacatggtcatggacaatgtctggaaccccatcatcatcgaccaaaactactgcgac
tcttctacaccctgcaagcaacagaaatctgcagtggaggtgagcaatgtgctgttcaag
aacatcaggggcacaagtgcatcagaggaggccatcatgctgcattgcagcagcagtgta
ccttgccatggcataaccttggagaatgtcaatctcactgtcaagggaggtagcagtaat
gccaagagcacctgccagaacgcagaatggaagaaatccgggagtgtcagtccacagcca
tgtggtttcaggaactga
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