Oryza sativa japonica (Japanese rice) (RefSeq): 4331353
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Entry
4331353 CDS
T01015
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03013
Nucleocytoplasmic transport
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4331353
09122 Translation
03013 Nucleocytoplasmic transport
4331353
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4331353
03041 Spliceosome [BR:
osa03041
]
4331353
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
4331353
Spliceosome [BR:
osa03041
]
Complex C
Other components
EJC/TREX
4331353
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
4331353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
4331353
NCBI-ProteinID:
XP_015627836
UniProt:
Q10SU9
Q0DVV9
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All DBs
Position
3:602449..609350
Genome browser
AA seq
638 aa
AA seq
DB search
MAEPTPPLPSNAGLRILLSKDRPPASSSSALAAATSAAVSSHTDRDRIIGVFRDALSRTE
SPEAFALQAVQDAIKPQKQTVLVLEENQSLENALRKLLQELASSAVQSGKRIMQYGDNEE
NNCPITRLLDIVLYLCERGHVEGGMVFQLLEDLTEMSTIKDCKDVFGYIESKQDVLGKQE
LFGRGKLVMLRTCNQLLRRLSKANDVVFCGRIIMFLAHFFPLSERSALNIKGVFNTSNET
KYEKDATDGISVDFNFYNTLWSLQEHFSNPALTAANLTRWQKFVSNLTVVLSTFEAQPLS
DDDGKLNNLDQEEDAAFNIKYLTSSKLMGLELKDPSFRRHILVQCLIFFDFLKAPGKTDK
EGPTGSMKEEIDSCEERVKKLLEIIPPKGKDFLQSIEHILEREKNWVWWKRDGCLAFEKQ
PFEKKPGQAGVRKRKPRWRLGNKELAQLWKWAEQNPNALTDSERICMPSVTEYWKPLAED
MDPSAGIEDEYHHKNNRVYCWKGLRFSARQDLEGFSRFCDYGIEGVVPQELLPPEVRSKF
YSKPGDKAKRPKREDPKGTSAQPKEQQVVSATPETDGGGSGAEPEEGAVPMDSDNAAIDE
GRKQSPEEVSGPESGQCEAEADGEDNMKNEASKDGPSA
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcccacgccgccgctgccgtcgaacgccgggctccgcatcctcctcagcaag
gaccggccaccggcctcctcttcctccgcgctcgccgccgccacctccgccgccgtctcc
agccacaccgaccgcgaccgcatcatcggagtgttccgggatgcgctgtctaggactgaa
tcccctgaagcttttgcccttcaggccgttcaggatgcgattaaacctcagaagcaaaca
gtgttggttctggaggagaaccaatccttagaaaatgctctacgcaaattgctgcaggaa
cttgcatcatctgcagttcaatctggtaaaagaataatgcaatatggggataatgaagaa
aataattgcccgataacacgtcttcttgatatcgtgctttacctttgtgaaagagggcat
gttgagggaggtatggtattccagctgttagaagatctgacagaaatgtcaactatcaaa
gactgcaaagatgtatttggatatattgagagcaaacaagatgtcttggggaagcaagag
cttttcgggcgtggcaagcttgttatgctaaggacttgcaaccaactacttcgaagatta
tcaaaggcaaatgatgtggtattctgcggacgtattatcatgtttctagcacatttcttc
ccattatcggaacgttcagctctcaatatcaagggggtttttaacacatcaaatgaaaca
aagtacgagaaagacgctacagatggaatttctgttgatttcaacttctacaatacccta
tggagtctgcaggagcattttagtaaccctgctttaactgctgcaaatctgacaagatgg
caaaagtttgtgtccaatttaacggttgtgctaagcacatttgaagctcagcctctcagt
gacgatgatggaaaacttaacaatcttgaccaagaggaagatgctgctttcaatattaag
tacctgacaagtagtaaattgatgggtttggagttgaaggacccaagttttcgacgccac
atccttgtccagtgcctcatattcttcgactttctcaaggcacctggaaagactgacaaa
gaaggtccaactgggagcatgaaagaggaaatcgattcttgtgaagagcgtgttaagaaa
cttctggagataattccaccaaaagggaaggacttcctacaaagcatcgagcatattctt
gagcgggagaaaaattgggtatggtggaaacgagatgggtgtctagcgtttgaaaaacaa
ccttttgaaaagaaaccaggccaagctggagtcagaaaacgtaagccaaggtggagattg
ggaaacaaagaacttgcccaactgtggaaatgggctgaacaaaaccctaatgctctgact
gattctgaacgtatttgcatgccatcagtaacagaatattggaaaccacttgcagaagat
atggatccatctgctggtattgaggatgaatatcaccacaagaataatcgtgtgtattgc
tggaaagggttacgattttcagccaggcaggatttggaaggtttttctcggttttgtgat
tacggtattgaaggagttgtacctcaagaactgttgccacctgaagtccgttccaagttt
tattcgaagcctggtgacaaggctaaacgacctaagagggaagacccaaaaggcacttca
gcccaacccaaggaacaacaggttgtttcagccacaccggagaccgacggtggcggtagc
ggggctgaaccagaagaaggtgctgtgccaatggattctgataatgccgcgatcgatgaa
ggccggaagcagagcccagaggaggtgtctggacctgaaagcgggcagtgcgaggctgaa
gccgatggcgaagataacatgaaaaatgaggctagtaaagacggtccatccgcatag
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