Oryza sativa japonica (Japanese rice) (RefSeq): 4339510
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Entry
4339510 CDS
T01015
Name
(RefSeq) transcription initiation factor IIB-like
KO
K03124
transcription initiation factor TFIIB
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4339510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4339510
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
4339510
Prokaryotic type
Archaeal type
TFB
4339510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
TF_Zn_Ribbon
Cyclin_N
HTH_Tnp_ISL3
Ribosomal_S27e
Motif
Other DBs
NCBI-GeneID:
4339510
NCBI-ProteinID:
XP_015640766
UniProt:
Q5KQD1
Q0DG84
LinkDB
All DBs
Position
5:complement(27201367..27202875)
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AA seq
316 aa
AA seq
DB search
MHDAAANDGAYCPDCRRATAVVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASD
DRDPNRVGDRADPFLPDHVGGTTIAYSSAPPKSADAAPLLTRRRVDVVGPSPENALVAAF
RGIADMADRLGLVATIRDRAKEVFKKLGEAPTKGLPRGRNRDAVYAACLFIACRNEGMPR
TYKELASVTAEGAAAKKEIGRLTTLIKKHLGDQGEGRAMDIGVVRSTDYLRRFCSRLGLG
HQDVRAAGDAVRRLEERLDVRRNPESIAAAIIYMVVQRAGGSKSVRDVSTATGVAEGTIT
AAHKELAPHASVLFGG
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcggcggcgaacgacggggcctactgcccggactgccggcgcgcgacggcg
gtggtgctcgaccacaccaccggcgacaccatctgcaccgagtgcgcgctcgtcctcgac
gcgcgctacatcgacgagacgtccgagtggcgcaccttcgccaacgacggcgccagcgac
gaccgcgaccccaaccgcgtcggcgaccgcgccgaccccttcctccccgaccacgtcggc
ggcaccaccatcgcctactcctccgccccgcccaagtccgccgacgccgccccgctgctg
acgaggaggagggtcgacgtcgtcggcccgtccccggagaacgcgctcgtcgccgcgttc
aggggcatcgccgacatggccgaccgcctcggcctcgtcgccaccatccgcgaccgcgcc
aaggaggtgttcaagaagctcggcgaggcgcccaccaaggggttaccgcgcggccggaac
cgcgacgccgtctacgccgcctgcctcttcatcgcgtgccgcaacgaggggatgccgcgg
acgtacaaggagctcgcctccgtcaccgccgagggcgccgccgccaagaaggagatcggc
aggctcaccaccctcatcaagaagcacctcggcgaccagggcgaggggcgggcgatggac
atcggcgtcgtgcgctccaccgactacctccgccgcttctgctccaggctcggcctgggc
caccaggacgtgcgcgccgccggggacgcggtgcgccgcctcgaggagcgcctcgacgtg
cgccgcaacccggagtccatcgccgccgccatcatctacatggtcgtgcagcgcgccggc
ggcagcaagtccgtgcgcgacgtctccacggccaccggcgtcgccgagggcaccatcacg
gcggcgcacaaggagctggctccccacgccagcgtcctcttcggtggctag
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