Oryza sativa japonica (Japanese rice) (RefSeq): 9269006
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Entry
9269006 CDS
T01015
Name
(RefSeq) putative DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
9269006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osa03400
]
9269006
Enzymes [BR:
osa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
9269006
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
9269006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
PTCB-BRCT
BRCT
DNA_ligase_IV
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
9269006
NCBI-ProteinID:
XP_015636869
LinkDB
All DBs
Position
4:complement(30629646..30638863)
Genome browser
AA seq
1296 aa
AA seq
DB search
MAATVRFGLLVAMFQAMSRDRTAAKKRARLRALLDRAYGPGGRDDYFSALRLVLPGLDRE
RGSYGLKEAALASVLVDALGIAKDSPDAVRLTNWRRGGGFRNAGNFALVAAEVLQRRQGM
TSGGLTIKEVNDALDRLAATENRSEKASILSSLIKKTNALEMKWLLMIILKDLKLGISEK
SVFHEFHPDAEDLFNVTCDLRLVCEKLNDRSQRHKRQDIEVGKAVRPQLSMRVNNASSAW
KKLHGKQVVAECKFDGDRIQIHKNGEEIHFFSRSFLDHSEYAPGMSKVIIENILVDRCIL
DGEMLVWDTVLNRFAEFGSNQEIAKAAKEGLETDRQLCYVAFDILYAGDTSVIHQSLTER
HEILQKVVRPLKGHLEILVPTGGLNIHRPPDEPCWSILAHSLDDVEKFFKDTVDNREEGI
ILKDLESKWEPGDRSGKWLKLKPDYIHAGADLDVIIIGGYYGSGRRGGEVAQFLVGLAVP
SDDNSYPKRFLSFCRVGTGLSDEELDALVTKLKPHFRKNEYPKKPPRFYEVTNHSKERPD
VWIESPDKSVIISITSDIRTIKSEVFAAPYSLRFPRIQRLRYDKPWHECLDVQAFVDIVH
SSNGTTHRAADDDNDLKNVKVKQPRTNKKGEKKNVSIIPSHLMKTDISGLKGETLIFANT
MFYFVNIPPSYNLDYFHKLVVENGGSFSMNLNDSVTHCIAAEKKGIKYQAATRQGRIIHY
SWILDCCKEKRLLHLQPKYILFLADFARHKFPEEIDSYADYFYWDIDISDLKQIFSNMDR
AVVDSNMVHHYKKKYCADERFCFFQGCCVYFYHAPLVNADYNVISDLALKRVKQDLTMHG
GQVCSILAPATHLIIVSVLQAYNFDMLYKSLPPAERRYLHDKRLQVVSNKWLEDSVEKQT
RLPETTYSLKPDTLEEIEIERSEETVQPCNDKLEENEKADTSHVKHAPRKRGRPSSSASR
TAKPAPRPVRRTRARRGNQHAKIDDVEPEESDHGETGLDDQIPDTDNISKMEVDSFDKDQ
VSARPVRRTRARRGKQHAKIDYGQSEESDPGETGQDDQRLDADYISKMEEDSSDRDQGAH
PTAPRVVRRSRAQRGKWLAKIDRETGPGETGQDDKKLNADSISKMEEHAHDKDQEPPPGA
QLITLDEQEPKGIKSSTTETPSSPKHERNQTVLRRDTAETTSSATCEKMEQMVDPLHAML
LDMIPSLGQMKTDVGNRVAEAKAETNPPWVGSSTSSYVAPVPQASASSASSSGVPAPHAG
SSTQSTGVPAPDPTAGAPKKKKVSYKDVAGALLKDW
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacggtgcggttcgggctgctggtggcgatgttccaggccatgtcgcgggac
cgcacggcggcgaagaagcgggcgcggctccgcgcgctcctcgaccgcgcctacgggccc
ggcggcagggacgactacttcagcgcgctccgcctcgtgctcccggggctcgaccgcgag
cgcggctcgtacgggctcaaggaggccgcgctcgcctccgtcctcgtcgacgccctcggg
atagccaaggactcgcccgacgccgtgcggctcaccaactggcggcgcgggggcggcttc
cgcaacgccggcaacttcgcactcgtcgccgctgaggtgctacagcggagacaaggaatg
acttctgggggattgacaataaaagaggtgaatgacgcacttgatcgcctggctgcaact
gagaataggtctgagaaggcttcgattctttctagtctgatcaagaaaaccaatgccctt
gaaatgaagtggctcttgatgattattctgaaagatttgaaattggggatcagtgagaag
agcgtatttcatgagttccatcctgatgctgaagacttgttcaatgtcacttgtgacctg
agattggtctgtgaaaagcttaatgatcgaagtcagaggcataagcgccaggatatagaa
gtggggaaggctgtcaggcctcagctatctatgagagtcaataatgcctcatctgcttgg
aagaagcttcacggaaaacaagtggttgctgagtgcaaatttgacggtgaccgtattcaa
attcacaagaatggggaagagattcatttcttctcaaggagctttcttgatcactcagaa
tatgcacctggaatgtccaaagttattatagaaaatatcttggttgacaggtgtattttg
gatggagaaatgcttgtttgggatactgtgcttaatcggtttgcagaatttggatcaaac
caggaaatagcaaaggccgcaaaggaggggctggagactgatcgacagttgtgctatgtt
gcttttgacattctttatgctggagacaccagtgttatccaccaaagtttgacagagcgg
catgaaattctgcagaaggttgtcagacctttgaagggccatctggaaatattagttcca
acaggtggcctgaacatccatcgtccgccagatgaaccatgctggtccattttggcacat
agtcttgatgatgtggagaaattcttcaaggacactgttgataatagagaagagggaatt
atactaaaggaccttgagtccaaatgggaacctggtgaccggagtggaaagtggcttaaa
ttaaagcctgattatatacatgctggtgctgatcttgatgttattattataggtgggtat
tatggctcaggacgtcgaggaggagaggttgcccagtttttagttggtcttgcagtgcct
tctgacgacaatagttatcccaaaagatttctttctttttgccgagtcggtactggtctt
tctgatgaagagcttgacgctcttgtcaccaaattgaagcctcatttcaggaaaaatgaa
taccccaaaaaaccaccaagattttatgaagtgacaaaccattcaaaggagaggccagat
gtttggatagaaagccctgataagtcagtcataatatccataacaagcgatattcgaaca
atcaaatctgaggtatttgctgccccatacagcttaaggttcccccgcattcaacggttg
agatacgataagccatggcacgagtgccttgatgttcaggcatttgtggacatcgtacat
tcaagtaatgggacaactcacagggcggcagatgatgataatgatctgaagaatgttaag
gtaaaacaaccgagaacaaacaaaaagggggagaaaaagaatgtgtcaatcatcccttca
catcttatgaagactgacatctcaggcctaaagggagaaacacttatatttgcaaataca
atgttttattttgtcaacatacctccatcatataatctcgactattttcataaactggtt
gtggagaatggcggatctttctcgatgaatcttaatgactcagttactcattgcatagca
gcggagaaaaaaggtatcaaatatcaggcagccacacggcagggaaggatcattcattat
tcctggatcttagactgttgcaaggaaaaacgccttcttcatttgcagcctaagtatatc
ctctttcttgcagattttgcaaggcacaaatttcctgaagagatcgactcatatgccgac
tatttctactgggacattgatatttctgacctcaagcagattttcagcaatatggacaga
gctgttgttgattcaaacatggtacaccactacaaaaagaagtattgcgcagatgagaga
ttctgcttcttccagggttgctgtgtctacttctatcatgcacccttggtgaatgcggac
tacaatgtaatatctgatcttgcactcaagagagtgaagcaggaccttaccatgcatggt
ggtcaagtgtgcagcattcttgctcccgctactcatttgattatagtttcagttctacaa
gcctacaattttgacatgctgtacaagagcctccctcctgccgagaggcgttatctacat
gacaaaagattgcaggttgtcagtaacaagtggttggaagattcagtggaaaaacaaaca
aggctgcctgaaaccacttacagccttaaaccggatacactagaagaaatagaaattgaa
cgaagtgaggaaactgttcagccttgtaatgacaagcttgaggaaaatgagaaggctgat
acatctcatgttaagcatgcaccaaggaaaaggggaaggccatccagtagtgcctcaaga
actgcaaagcctgctcctagaccagtccgaagaacaagagctagaagaggaaatcaacat
gcaaaaatagatgatgttgagcctgaagaaagtgaccatggtgaaacaggtctagatgat
caaataccagacacagataacatctctaaaatggaagtagatagctttgacaaagaccaa
gtttctgctagaccagtccgaagaacaagggctaggagaggaaaacagcatgccaaaatc
gattatggtcaatctgaagaaagtgatcctggtgaaacaggacaggatgatcaaaggttg
gatgcagattacatctctaagatggaagaagatagcagtgacagagaccagggggcacat
ccaaccgctcctagagtggtccgaagatcaagggctcaaagaggaaagtggcttgcaaag
atagatcgtgaaacaggtcctggtgaaacaggtcaagatgataagaagttgaacgcagat
tccatctctaagatggaagaacatgcccatgacaaggatcaagaaccacctccaggtgcc
cagcttatcacattggatgagcaggagcccaaaggaatcaaatcgagtaccacggagaca
ccaagcagcccaaaacacgaacgcaaccaaacagttcttagaagagacaccgctgaaaca
acgagtagcgcaacgtgcgagaagatggaacagatggttgatccgctgcacgcaatgctc
ctggacatgattccatcgcttggccagatgaagacggacgttggtaacagggttgccgaa
gccaaagctgagacgaatccaccttgggtaggaagctccacatccagttacgtggctcca
gtgccacaggcctcagcgagttctgcatccagttctggtgttccggcaccacacgcagga
agctccacacagagtaccggggttccagccccagatccaactgctggtgctccaaagaag
aaaaaggtcagttacaaggacgtcgccggtgcacttctgaaggattggtga
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integrated database retrieval system
