Ostreococcus tauri: OT_ostta02g01170
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Entry
OT_ostta02g01170 CDS
T01358
Name
(RefSeq) Transcription factor TFIIH subunit p52/Tfb2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ota
Ostreococcus tauri
Pathway
ota03022
Basal transcription factors
ota03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OT_ostta02g01170
09124 Replication and repair
03420 Nucleotide excision repair
OT_ostta02g01170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ota03021
]
OT_ostta02g01170
03400 DNA repair and recombination proteins [BR:
ota03400
]
OT_ostta02g01170
Transcription machinery [BR:
ota03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
OT_ostta02g01170
DNA repair and recombination proteins [BR:
ota03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
OT_ostta02g01170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetOD2
Motif
Other DBs
NCBI-GeneID:
34945585
NCBI-ProteinID:
XP_022840702
LinkDB
All DBs
Position
2:295916..297496
Genome browser
AA seq
526 aa
AA seq
DB search
MDVNGPSTSHARAHPSDGAFVTFLSTLKDDSLDELYESSVWAVLAALRACDAIGKQIVLR
LSFVSGGSIAGAELERWIADGDAGRRATARALGRLSRVRAIERVVDGGEAREANAMEVDV
GTRGRDFEEDLERGSFVGTIRVRPAFAAHVRRALERGFVGLDADGGGAEGGDDVVELEVE
KKVPDRATLSAYAKSKWEDLLLTLTGASDAFSKPGSKVSGRLDAQALFRAAGLTTSDASG
DKKARKRNAGVTAEGFRFLLTTAQEQVWVLLTQYIRDESRTASATSAISFLLRLTFQRPG
RAYAMTGVLSDTEQDVVRDLTHLGLLYTFDVKKRWYYVPTLLSSGLSGGFASDDGDNRAM
VSAEGHVIVETNYRVYAYTSSLVEMEILRLFTRADYRLPNLYVGMLTRESVQNALRAGVD
AEQIVAYLRAHAHKQVRKKKPSVPGTVCDQIRLWARDMMRVRSDECVLYCDFPPVGGFYN
AVVAEATKRGALLWRDDIGRKLTVRADAHEAMKPVVAALKQSLGDT
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgaacggtccgtcgacgtcgcacgcgcgcgcgcatccctccgatggcgcgttc
gtgacgtttttatcgacgctgaaggatgactctctggacgaactgtacgagtcatccgtc
tgggcggtgctcgcggcgttacgcgcgtgcgacgcaatcgggaagcagatcgtgctccgg
ttatcgttcgtgagcggtggctcgatcgctggtgcggaactcgagcggtggatcgcggac
ggcgacgcgggacggcgagcgacggcgcgggcgttgggacggttgtcgcgcgtccgagcg
atcgagcgcgtcgtcgacggaggtgaagcgagggaagcgaacgcgatggaggtcgatgtt
gggacgcgtggacgcgattttgaggaggatttggagcgcgggtcgttcgtgggaacgatt
cgcgtgcggccggcgttcgccgcgcacgttcgaagagcgctcgagcgcggattcgtcggt
ttagatgccgacggtggcggtgcagagggcggtgacgatgtggtagagcttgaggtggaa
aagaaggttcccgatcgagcgacgctgagcgcgtacgcgaagagtaagtgggaggatttg
ttgttgacgctcacgggggcatcggacgcgttttccaaacctgggtcaaaggtgagcgga
cgactggacgcgcaggctttgtttcgcgcggcgggactcacgacatcagacgcgtcgggg
gataagaaggcgcggaagcgaaacgccggcgtcaccgcggagggattcagattcttgctc
accacggcgcaggagcaggtttgggttctgttaacgcaatacattcgcgacgagtcgcgc
acggcgtcggcgacgagcgcgattagttttctgcttcgtctgacatttcagcgaccggga
cgggcgtatgctatgacgggtgtgctgagtgacaccgaacaagacgtcgtgcgcgatctc
acgcatctcggattgctctacacctttgacgtgaagaagcgatggtattacgtcccaacg
ctcctctcgagcgggctctccggcggtttcgcctcggatgacggcgacaatcgagctatg
gtaagcgctgagggacatgtcatcgtcgaaacgaactatcgcgtgtacgcatatacgagc
tcgttggtggagatggagatcttacgcctgttcacgcgcgccgattatcgcctgccgaac
ctgtacgtgggtatgctcacgcgcgagagcgtgcaaaatgcccttcgtgcgggcgtcgac
gcagaacagatcgttgcgtaccttcgggcgcacgcgcataaacaggtgcggaaaaagaaa
ccgagcgttccgggcacggtgtgcgatcaaatcaggctctgggctcgcgatatgatgcga
gtgcgatcggatgagtgcgtgctctactgcgatttcccacccgtgggtggtttttacaac
gccgtcgtcgccgaagccacaaaacggggggcgctattatggcgcgatgacatcggtaga
aagctcaccgtgcgcgcggatgcgcacgaggcaatgaaacccgtcgtcgccgcattgaag
cagtctttgggcgacacgtga
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