Ostreococcus tauri: OT_ostta15g01265
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Entry
OT_ostta15g01265 CDS
T01358
Name
(RefSeq) Regulator of nonsense-mediated decay, UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
ota
Ostreococcus tauri
Pathway
ota03013
Nucleocytoplasmic transport
ota03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
OT_ostta15g01265
03015 mRNA surveillance pathway
OT_ostta15g01265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta15g01265
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
OT_ostta15g01265
mRNA cycle factors
P-body specific factors
OT_ostta15g01265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
9830851
NCBI-ProteinID:
XP_003083271
UniProt:
Q00V81
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All DBs
Position
15:221892..222851
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AA seq
319 aa
AA seq
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MDARDAARAGRGRGRGRGRRARSATPRASALDDAIAAGWTKIVIRPLPSRLAREAFERTL
ARDGFDPPSAFFDWVGYRTVGRGGVDGRGTARRMRARSIAYVACKTTEIAKRVRDRYHGA
TFRVRARDSEGRVIEGEDGVEETRATVERAPSQWTPRTFGERYASTSGETNAVNALEGTI
ESDAEYLKFVSELESERTRTRTTGAVAPKQESARRKSTALLEYIWKKRAAEERASKRAAN
GGKGASKTKKTKQRGDADAGENKSDKQLLDAAPKRRNKQKSKKSSQANGTAAAPVAPGGK
KTARTDDKRIPVPKASLER
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggacgcccgcgacgccgcgcgcgccgggcgcggacgcggacgcggccgaggacgccgc
gcgcggtcggcgaccccgcgcgcgtccgcgctcgacgacgcgatcgcggcgggatggacg
aagatcgtcatccgtccactcccgagccgtctcgcgcgcgaggcgttcgaacgcacgctc
gcgcgcgatggattcgacccaccgagcgcgttctttgactgggtggggtatcgcacggta
gggcgtgggggggtggatgggcgtgggacggcgcgaaggatgcgcgcgcggtcgatcgcg
tacgtcgcgtgtaagacgacggagatcgcgaagcgggtgagagatcggtaccacggggcg
acgtttcgcgtgcgcgcgcgtgattcggagggacgggtgatcgagggggaggatggcgtg
gaggagacgcgggcgacggtggagcgggcgccgagtcagtggacgccgaggacgttcggg
gaacggtacgcgtcgacgagcggcgagacgaacgcggtgaacgcgttggagggaacgatc
gagagcgatgcggagtatttgaagtttgtgagcgagctcgagagcgagcggacgcggacg
cgcaccacgggggcggtggcgcccaagcaagagtctgcgcgacggaaatccaccgccctc
ttggagtacatttggaagaagcgggcggcggaggagcgcgcgagtaagcgagcggcgaac
ggcgggaagggcgcgtcgaagacgaagaagaccaagcaaaggggcgacgcggacgctggg
gaaaacaagagcgacaagcaacttctggacgcggcgccgaaacggagaaacaaacagaaa
tcaaagaaatcttcacaggcgaacggcaccgccgccgcccccgtcgcacccggcgggaag
aagaccgcgcggaccgacgacaaacgcatacccgtcccgaaggcgtcactcgagcgttag
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