Onychostruthus taczanowskii (white-rumped snowfinch): 121347103
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Entry
121347103 CDS
T07590
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
otc
Onychostruthus taczanowskii (white-rumped snowfinch)
Pathway
otc03013
Nucleocytoplasmic transport
otc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121347103 (UPF1)
03015 mRNA surveillance pathway
121347103 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otc03019
]
121347103 (UPF1)
Enzymes [BR:
otc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121347103 (UPF1)
5.6.2.5 RNA 5'-3' helicase
121347103 (UPF1)
Messenger RNA biogenesis [BR:
otc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121347103 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
121347103 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
121347103
NCBI-ProteinID:
XP_041281382
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPPQGQG
PPGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgccgacacgcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccggccaggcggggccgccacagggccagggc
ccccccggagcggggcagggagctccgggcccgctggaagcgcaggtgaacggtcctgat
gggatcctgcagaatggagctgtggatgagaacgtggccaagaccagccagctcctggca
gagctcaacttcgaggaggatgaggaggacacttactacaccaaggatctccctgtgcac
gcctgcagctactgtgggatccacgaccctgcctgcgtggtttactgcaacaccagcaag
aaatggttctgcaacggccgtggaaacacctctggcagccacattgtgaaccacctggtg
agagccaagtgcaaggaggtgaccctgcacaaggacgggcccctgggagagaccgtgctg
gagtgctacaactgcggctgccgcaacgtcttcctgctgggcttcatcccagccaaggct
gactccgtggtggttctgctgtgcaggcagccatgtgccagccagagcagcttgaaggac
atcaactgggacagttcccagtggcagcccctgatccaggaccgctgcttcctctcctgg
ctggtgaagatcccctcggagcaggagcagctccgggcccgccagatcacagcccagcag
atcaacaaactggaggagctctggaaggaaaatccatctgcaaccctcgaggacttggaa
aaacctggtgttgatgaggaaccccagcatgtcctgcttagatacgaagatgcttatcaa
taccaaaatatatttggtcctctggtcaagcttgaggcagattatgacaagaaactcaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcttgaacaagaagaga
attgcttatttcactttgccaaagactgattcagacatgcgcctcatgcaaggagatgag
atctgcctgaggtacaagggagacctggcccccctctggaagggaattgggcacgtcatc
aaagttcctgatagttctacagattatggtgatgagatagccatcgagctgaggagcagc
gtgggagctcccgtggaggtcactcacaacttccaggtggattttgtctggaaatccact
tcctttgacaggatgcagagtgctctgaaaacatttgcagtggatgagacctcagtgtct
gggtacatttaccacaaactgctgggccacgaggtggaagatgtcatcatcaaatgccag
ctgccaaaacgcttcacagcccagggactccctgatctcaaccactctcaggtttatgct
gtcaagactgtcctgcagcgtcctctgagccttatccagggtccccctggcactgggaaa
acagtgacatcagccaccatcgtgtatcacctggccaggcagggcaatgggcctgtgctg
gtgtgtgcccccagcaacatcgctgtggatcagctgacggagaagatccaccagactggc
ctcaaggtggttcgtctgtgtgccaagagccgcgaggccatcgactcccccgtgtccttc
ctggccctgcacaaccagatcaggaacatggacagcatgccagagcttcagaagctgcag
cagctcaaggatgagactggagaactttcctctgctgatgagaagcgttaccgggcgctg
aagcgcacggcggagcgggagctgctcatgaatgctgatgtgatctgctgcacgtgtgtg
ggagctggagaccccaggctggccaagatgcagttccgctccatcctcatcgacgagagc
acgcaggccaccgagcccgagtgcatggtgcccgtggtcctgggggcaaagcagctgatc
ctggtgggtgaccactgccagctggggcctgtggtgatgtgcaagaaggcagccaaggcc
gggctgtctcagtccctgtttgagaggctggtggtgctgggcatccggcccatccggctg
caggtgcagtaccgcatgcaccccgcgctcagcgccttcccctccaacatcttctacgag
ggctccctgcagaacggcgtcaccgcagctgacagggtgaagaaaggctttgatttccag
tggccccagcctgacaaacccatgttcttctacgtgacccagggacaggaggagattgcc
agctcaggcacctcttacctgaacaggacggaggctgccaacgtggagaagatcaccacc
aagctgctcaaggctggggccaagcctgaccagattggcatcatcaccccctacgagggg
cagcgctcctacctggtgcagtacatgcagttcagtggctccctgcacaccaagctctac
caggaagtggaaattgcgagcgtggacgccttccagggcagggagaaggatttcatcatc
ctgtcctgtgtgagggccaacgagcaccagggcattggcttcctcaacgaccccaggagg
ctcaacgtggccctgacaagagccaggtacggggtgatcattgtgggcaaccccaaggcc
ctgtccaagcagcccctctggaatcacctcctcaattactacaaggagcagaaggtgctg
gtggaggggcccctgaacaacctgcgcgagagcctcatgcagttcagcaaaccccgcaag
ctggtcaacaccatcaaccctggtgcccgtttcatgaccactgccatgtatgatgcacgg
gaggccatcatccctggctctgtctacgaccgcagcagccaagggcgtccatccaacatg
tacttccaaacccacgaccagattgggatgatcagtgctggccccagccacgtcactgcc
atgaacattcccatccccttcaacctcgtcatgcccccgatgccccccccgggctacttc
ggccaggccaacggccccgctgcaggccgtggggctcccaaagggaagacgggccgcggc
gggcggcagaaaaaccgatttgggattcctggcacgagccagtccaacctccccaacagc
caggccagccaggacgtggtgtcccagcccttctcccagggccccctgacccagggctac
atctccatgagccagccctcccagatgagtcagcctgggctctcccaaccggaattatcc
caggacagttaccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggac
tcaacttaccagggagaacgagcatatcaacatggtggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
