Opitutus terrae: Oter_2989
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Entry
Oter_2989 CDS
T00689
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ote
Opitutus terrae
Pathway
ote03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ote00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Oter_2989
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ote03400
]
Oter_2989
Enzymes [BR:
ote01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Oter_2989
DNA repair and recombination proteins [BR:
ote03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Oter_2989
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACB76270
UniProt:
B1ZYU7
LinkDB
All DBs
Position
complement(3836592..3840209)
Genome browser
AA seq
1205 aa
AA seq
DB search
MADPATRARHKLTGITPSAQGAVLTELTLRHPAPVWIVVAADLKAAERLAEDAAFFHGAA
QLPHAQTTLVFPESMPDAGDMREAFAASNDRFTVLSKLRATRSLGVATSSEVGGARRRGG
ATALPPLVIVTTPGALLQPVPALEEFATREFTLSRGQTQSFQGLLERLQQLDYDSEAVCE
APGHYAIRGGIIDVYPVTANTPYRLDFFGDEIEAIREFDPVTQRSGATVESITISASSRV
RLDPSKTGIADYLSPRTHLVLIEPAALEEKLSQLAREADGATGVPPVGLESAAVSPVHPL
NALLGKCAAIFGVSDLDEAAALLEDADDDSTWDSESLSHHRHYPEDALVAQERLQVEEDA
RRRFLQQVAAWRQSGFAVFLVVSKEGEEQRIREILQEDAKLKRIQPQFLRGTLNEGFRIT
FRGANPSPPEAKPEETPPTLTWPSLPPKVRGLVVVTETEVFGRQRQRRPALNPRAMAQRA
QIDQLLDFSELVEGDFVVHLQHGIAHYRGLTKLDTAQGVREVISLEFDDHVTLHVPLQES
HLISRYVGLSKTKPQLGRIGSGRWEKARLAAERATIDLAAELLRIQAAREAQPGFAFPPD
TTWQKEFEASFPFTETRDQLRAIEETKTDMERTQPMDRLICGDVGFGKTEVAIRAAFKAV
QGGRQVAMLVPTTVLAQQHLNTFRERMAGYPIAIEMVSRFRSRADQKKILTATAAGQVDI
LIGTHRVLQHDVKFRDLGLVIIDEEQRFGVKHKEVFKQMRSTVDVLSMSATPIPRTLYLA
LTGARDLSVIETAPTNRHPIQTVVKTYDEKLVIDAVRHELRRGGQVFYLHNRIETINLVA
ARLRELMPDVTIGVGHGQMEAADLEEVMTEFVAGRYQLLVCTTIIESGLDIPNCNTILIE
GADRFGLSQLYQLRGRVGRFKHQAYAYLLLHRHTRLLDVARQRLTAMRQHTQLGAGFRIA
MRDLELRGAGNLLGAQQSGHIVGVGFELYCQLLRQSVARLKGEKTAAAIRASVKLDFVIV
GEAEGRAGPPLPAGKAKDAPATAPAASGIAALPSSARGRHQDGYTALRDAEDAQVAELPK
IQARLPAAYIPETRLRIDFYRKLAMADSPAKLKEIEAALQDRFGKIGPDVRALLLTTQIR
ILAEQTNILSVETEANRLKCLRNSGRRDDWVQVGTRFPRLTASTPLLRLKEIIAFLHNLP
SPPST
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atggctgatcctgccacacgcgcgcgccacaagctcaccggcatcaccccgtcagcgcag
ggcgcggtgttgaccgagctcacgctgcgtcatcccgcgccggtgtggatcgtcgtggcc
gccgatctcaaagccgcggagcggctcgcggaagacgcggcgttcttccatggcgccgcg
caactgccgcacgcacagacgacgctggtgttccctgaatcgatgcccgacgcgggcgac
atgcgggaggccttcgccgcctccaacgaccgattcaccgtcctctcgaagctccgcgcc
acgcgttcgctgggcgtcgccacctcctccgaggtcggtggagcgcgccggcgtggcggc
gccacggcgctgccgccgctcgtgatcgtcacgacgcccggcgcgctgctgcagccggtg
cccgcactcgaggagttcgccacccgcgagttcacgctcagccgcggacaaacccaatct
ttccaaggcttgctcgagcgactgcaacaactggactacgattccgaggcggtctgcgaa
gcgccgggccactacgcgatccgcggcggcatcatcgacgtctacccggtgaccgccaac
acgccgtatcggctcgacttcttcggtgacgagatcgaagccatccgcgagttcgatccg
gtcacgcagcgctccggcgcgaccgtcgagtcgatcacaatctccgcctcgtcccgcgtc
cggctggatccgtcgaaaacgggaatcgcggattacctttcgccgcgaacgcatctggtg
ctcatcgagcccgccgcgctcgaagaaaagctcagccagctcgcccgggaggccgacggt
gccaccggcgtcccccccgtgggcttggagtctgcggccgtttctccggttcatcccctc
aacgccctcctgggaaaatgcgccgccattttcggcgtgagcgatctcgatgaagccgcc
gcgctgctcgaagacgccgacgacgatagcacgtgggactccgaaagtctctcgcaccac
cgccattatccagaggatgcgctcgtggcgcaggaacgcctgcaggtcgaagaggacgcg
cggcgacgcttcctgcagcaggtcgccgcgtggcggcaatccggcttcgctgttttcctc
gtcgtttcgaaggagggcgaagagcagcggatccgcgagatcctgcaggaagacgccaag
ctcaaacgcatccagccgcagttcctccgcggcacgctcaacgagggttttcggatcacg
tttcgcggagccaacccttcgcctccggaagccaagccagaggagaccccccccaccctc
acctggcccagtctccccccgaaagtccgcggtctggtcgtcgtcaccgaaacggaagtc
ttcggtcgccagcgtcagcggcggcccgcgctgaatccacgcgcgatggcccagcgcgcg
cagatcgatcagctgctcgatttctccgaactggtcgaaggcgacttcgtcgtgcatctg
cagcacggcatcgcccattaccgcgggctcaccaagctcgacaccgcgcagggcgtccgc
gaggtgatctcgctggagttcgacgaccacgtgacgttgcacgtgccgctgcaggaatcg
cacctgatcagccgctacgtcgggctcagcaagaccaagccacagctcggccggatcggc
tcaggccgctgggagaaagcccggctcgcggcggagcgggccacgatcgatctcgccgcg
gaattgctccgcatccaggccgcacgcgaggcgcagccgggcttcgcgtttccaccggac
accacctggcagaaggaattcgaagcgtcattcccgttcaccgaaacccgggatcagctg
cgcgccattgaagaaacgaagaccgacatggaacgcacgcagccaatggatcggttgatc
tgcggcgacgtcggctttggcaaaacggaggtcgcgatccgcgccgccttcaaggccgtg
cagggcggccggcaggtcgcgatgctggtgccgacgaccgtcctcgcgcagcaacacctc
aacacgtttcgcgaacggatggccggttacccgatcgcgatcgagatggtcagccggttc
cgctcgcgcgccgatcagaaaaaaattctgaccgccaccgcggccgggcaggtcgacatc
ctcatcggcacgcatcgcgtgctgcagcacgacgtgaagttccgcgatctcgggctcgtg
atcatcgacgaggagcagcggttcggcgtgaagcacaaggaagtgttcaagcagatgcgc
tcgaccgtcgacgtgctctcgatgagcgccacgccgattccgcgcacgctctatctcgcg
ctcaccggcgcacgcgacctcagcgtgatcgaaaccgcgccaaccaaccgccacccgatc
cagaccgtcgtcaaaacctacgacgagaagctggtgatcgacgcagtccgccacgagctc
cgccgcggcggccaggtgttctacctccacaatcgcatcgagacgatcaacctcgtcgcc
gcgcggctgcgcgagctgatgccggacgtcaccatcggcgtgggccacggccagatggaa
gcggccgatctcgaggaagtgatgaccgagttcgtcgccggtcgctaccagctgcttgtc
tgcacgacgatcatcgagagcggactcgatatcccgaactgcaataccatcctcatcgag
ggcgccgatcggttcggcttgtcgcagctctatcagctccgcggccgcgtcggccggttc
aagcatcaagcctacgcctacctgctcctccaccgccacacgcgtctgctcgatgtcgcg
cgccagcggctcaccgcgatgcgccagcatacccagctcggtgccggtttccgcatcgcg
atgcgcgatctcgagctccgcggcgcgggcaatctgctcggggcccagcaaagcggccac
atcgtcggcgtcggtttcgagctgtattgccagctcctccgccaatccgtcgcccggctg
aaaggcgaaaagaccgccgccgccattcgcgcgagcgtgaagctcgacttcgtgatcgtc
ggcgaagcggaagggagggcgggccctccgttgcccgccgggaaagccaaagacgcccct
gcaaccgctccggcggcgagcggaatcgccgccttaccgtcctccgcccgcggccgtcac
caggacggctacacggcgctccgggacgctgaggacgcccaagtcgccgaattgccaaag
attcaggcccgattgcctgccgcttacatcccggaaacgcgcttgcggatcgatttctat
cgcaagctcgcgatggccgactcgccggccaagttgaaggagatcgaagccgccttgcag
gaccgtttcgggaaaatcggccccgacgtgcgggcgttgttgctcaccacgcaaatacgc
atcttggcggaacaaacaaatatcctttccgtcgaaaccgaggccaaccgcctgaagtgt
ctgcgcaacagcggccgccgcgacgactgggtgcaggtcggcacccggtttccaaggttg
accgcctccacacccctcctacggttgaaggaaattatcgcgtttctgcacaatctgccc
agcccgccctcgacatga
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