Opitutus terrae: Oter_4309
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Entry
Oter_4309 CDS
T00689
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ote
Opitutus terrae
Pathway
ote03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ote00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Oter_4309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ote03400
]
Oter_4309
Enzymes [BR:
ote01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Oter_4309
DNA repair and recombination proteins [BR:
ote03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Oter_4309
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ACB77581
UniProt:
B1ZP92
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All DBs
Position
complement(5586773..5588584)
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AA seq
603 aa
AA seq
DB search
MSLKAYVKKRDFRKTAEPKGGRAPGGAGHRFVVQKHAASRLHYDFRLELGGTLKSWAVPK
GMPYAKGDKRLAVHVEDHPVSYIDFEGTIPQGQYGGGTVMVWDRGTFEPLSEAPLKELDG
GKLHFVLRGKKLKGEWYLVRLRGGDEWLLIKGGEDMKPVSAKADDTSVLSGKSMKQLSEG
KGRVWQSNRSEPKSFRASVAEAMHAAETKRRTKKETFANLEPRRPRRGRQASDAKASRDE
GVAAPAKAAHGRAADKSAGVKAEHGSERARRPRAQGRASKLTPSFIEPMKALLVDAPPPG
EWIYEIKFDGFRAMAFRDRKGVRLLSRNNKPFAAKFPEIVDAVAALDVKDAVIDGEIVAL
DDKGRSSFQLLQAYDLGQEHPPLFFYAFDLLQWNGRDLRAEPLTERKAQLERLLAGHDGL
VRYSKSLGADAEPLLAQARKLGLEGLIGKRPDARYETGQRSGAWIKLKLHQEQEFVIGGY
SPPGGSRPYFGALLVGVHEGAGLTFAGKVGTGFNVKLLRELHGRFQKIRTEACPFVNLPE
KRRGRYGAGVTAAEMKRCTWVKPELVAQIKFAEWTRDDRLRQPVFLGLREDKPAREVVRE
RSD
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctcaaggcctatgtcaaaaagcgggacttccgcaaaacggcggagccgaagggg
gggcgcgcgcccggcggagcagggcatcggttcgtcgtgcaaaagcacgcggcctcgcgg
ctgcattacgattttcggctcgaactcggcggcacgctgaagtcgtgggcggtgccgaag
ggcatgccctacgcgaaaggcgacaagcggctggcggtgcacgtcgaggaccacccggtc
tcctacatcgatttcgagggaacgattccgcagggccagtacgggggaggcacggtgatg
gtgtgggaccgcggcaccttcgaaccgctgagcgaggcgccgttgaaggagctcgacggc
gggaaactgcattttgtgctgcgcggaaaaaaactgaagggcgagtggtatctcgtccgg
ttgcgtgggggcgacgagtggctgctgatcaaaggcggcgaggacatgaagccggtgagt
gcgaaggcggatgacacctccgtgctctccggaaaatcgatgaagcagctgtcggaaggg
aagggccgggtatggcaatcgaaccggagcgaaccgaaatcgtttcgcgcgagcgtggcg
gaggcaatgcacgcggccgagacaaagcggcggacaaaaaaggaaacgttcgcgaacctg
gagccgcgacgcccccgtcgcggccggcaggcgagcgacgcgaaagcgagccgcgacgag
ggcgtcgcggccccagccaaagccgctcacggtcgagctgcggataaaagcgcgggcgtg
aaggccgagcacggatcggagcgggcgagacgcccgcgcgcccagggccgagcctccaaa
ctcaccccgtcgttcatcgagccgatgaaggcgctgctggtggacgcgccgccgccgggc
gaatggatttacgagattaagttcgacggctttcgcgcgatggcgtttcgcgatcggaag
ggcgtgcggctgctctcacggaacaacaagccgttcgcggcaaagtttccggaaatcgtc
gacgcggtggcggcgctcgacgtaaaggatgcggtgatcgacggagagattgttgcgctc
gacgacaaggggcgctcctcgtttcagctgctgcaggcgtatgatctcgggcaggaacac
ccaccgttgtttttctatgcgttcgacctgctgcagtggaacgggcgcgacctgcgcgcc
gaaccgctgacggaacggaaggcgcaactggagcggctgctcgccggccacgacgggctc
gtgcggtattcgaaatcgctgggcgcggacgcagagccactgctggcgcaggcgcgaaaa
ctcgggttggaaggcctgatcggcaagcggccggatgcacgttacgaaacgggccagcgc
agcggcgcgtggatcaaactgaagctgcatcaggagcaggagttcgtgatcggcggctac
agtccgccgggcggttcgcggccgtatttcggtgcactgctcgtcggagtccacgagggc
gcggggctcacgtttgccgggaaggtggggaccggattcaacgtaaagctgctgcgcgag
ctgcacggccggtttcaaaaaatccgcacggaggcctgtccgttcgtgaacctgcccgag
aaacgccgcggccgctatggcgcgggcgtcacggcggccgagatgaagcgctgcacctgg
gtgaagccggaactggtggcgcagatcaagtttgcggagtggacgcgcgacgaccggctg
cgtcagccggtgtttctcggactgcgcgaagacaagcccgcccgcgaggtggtgcgcgaa
cggagtgattga
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