Ottowia oryzae: C6570_07685
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Entry
C6570_07685 CDS
T05363
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
otk
Ottowia oryzae
Pathway
otk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
otk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C6570_07685 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otk03400
]
C6570_07685 (mfd)
Enzymes [BR:
otk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C6570_07685 (mfd)
DNA repair and recombination proteins [BR:
otk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C6570_07685 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AVO34137
UniProt:
A0A2S0ME78
LinkDB
All DBs
Position
complement(1644380..1647853)
Genome browser
AA seq
1157 aa
AA seq
DB search
MDLPKLTPGKRHAMPRPPGSADALLLAQTAQRAAEAKRLTAIVTADAVDARRLQDELAFF
APALRVVMFPDWETLPYDTFSPHQDLISERLATLWAIRQGQADVVLIPATTALYRLAPPS
FLAGTTFHFKQGQKLDEAALKSQLTLAGYAHVTQVVSPGEYAVRGGLIDLFPMGSAVPYR
VDLFDDEIDSIRAFDPDTQRSLYPVPEVRLLPGREFPTHDEARAKFRHRWRELLEGDPTK
SRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLPDSATLVLHGDLEAAFQQFAQDTRER
FRLAQGDPERPVLPPEALFLSAEGFYLAAKPLAQLAVRPGVEDVAASAFAQPLPTLTVVR
GADEPLARLQAHIGSTAQRVLVLAESDGRRESLLDFLRASGVSPPAFDSLAEFQAQGDEK
IGIATAALAQGFSWLEGGIDLVTETELFAAGVATRRRRKQEQVSDVEALIKDLSELNVGD
PVVHAQHGIGRYRGLVNMDMGAKNPDGSPALQEFLHLEYAGDAVLYVPVSQLHLIGRYTG
VSAEEAPLHKLGSGQWDKAKRKAAEQVRDAAAELLNIYARRAAREGHAFRYSPTDYEQFA
ADFGFEETADQKAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFVAVTGGKQVAL
LAPTTLLAEQHYQTLVDRFAKWPVKIAEMSRFRSAKEITAALKGVADGSVDIVVGTHKLL
SEKTQFKNLGLLIIDEEHRFGVRHKEQMKQLRAEVDVLTLTATPIPRTMGMALEGLRDLS
VIATAPQRRLAIKTFVRNEGSGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEMLP
EARIAVAHGQMPERELERVMRDFVAQRTNVLLCSTIIETGIDVPTANTIVISRADKFGLA
QLHQLRGRVGRSHHQAYAYLMVPEIEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEIRG
AGEVLGENQSGNMMEVGFQLYNEMLAEAVRSLKAGKEPDLLSPMQAATDINLHAPALLPG
DYCGDVHLRLSFYKKFATARSNDQIDTLVEELVDRFGKLPAQAQTLIDVHRLRVLSQAYG
VQKVDAAPGVINISFKPNPPIDAMAIIRMIQKNKHIKLAGNDKLRIEKELAEPKDRAQMV
RDVLRSLGQPVAAQPTA
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atggacctgcccaagctcacccccggaaaacgccacgctatgccccgcccgccgggctct
gccgacgcgctgctgctcgcccagacggcccagcgcgcggccgaggccaagcgcctgacg
gccatcgtcaccgccgacgcggtggacgcgcgccgcctgcaggatgagctggccttcttc
gcgcccgcgctgcgcgtggtgatgttccccgactgggaaacgctgccctacgacaccttc
agcccgcaccaggatctgatcagcgaacgcctggccacgctgtgggccatccgccagggg
caggccgacgtggtgctgatcccggccaccaccgcgctgtaccggctggcgccgccctct
ttcctggcgggcaccaccttccacttcaagcagggccagaagctggacgaggccgcgctg
aaaagccagctgaccctggccggctacgcgcacgtcacgcaggtggtcagccccggcgaa
tacgccgtgcgcggcgggctgatcgacctgttccccatgggcagcgcggtgccctaccgg
gtggatttgttcgacgacgagatcgactccatccgcgcgttcgaccccgacacccagcgc
agcctgtaccccgtgcccgaggtgcgcctgctgccggggcgcgaattccccacgcacgac
gaggcgcgcgccaagtttcgccaccgctggcgcgagctgctggagggcgacccgaccaag
agccgcatctacaaggacatgggcaacggcgtggccacggcgggcatcgagtactacctg
ccgctgttctttgacgaaaccgccacggtgttcgactacctgccagacagcgccacgctg
gtgctgcacggcgacctggaagcggccttccagcagttcgcgcaagacacgcgcgagcgg
tttcgcctggcgcagggggaccctgagcggcccgtgctgccgcccgaagcgctgttcctc
agcgccgagggcttttacctggcggccaagccgctggcccagctggccgtacgccccggc
gtggaagacgtggccgccagcgccttcgcccagccgctgcccacgctgacagtggtgcgc
ggcgccgacgagccgctggcgcgcctgcaggcccacattggcagcacggcccagcgcgtg
ctggtactggccgaaagcgatggccgccgcgaaagcctgctggactttctgcgcgccagc
ggcgtcagcccgcccgcgttcgattcgctggccgaattccaagcgcagggcgacgagaag
atcggcattgccaccgccgcgctggcgcagggcttttcgtggctggaaggcggcatcgac
ctggtcaccgagaccgagctgtttgccgcgggcgtggccacgcgccgccgccgcaagcag
gagcaagtcagcgacgttgaggcgctgatcaaggacttgtccgagctgaacgtgggcgac
ccggtggtgcacgcgcagcacggcatcggccgctaccgcgggctggtgaacatggacatg
ggcgccaagaacccggacggcagcccggcgctgcaggaattcctgcacctggaatacgcg
ggtgacgcggtgctgtacgtgccggtgagccagctgcacctgatcgggcgctacaccggc
gtgagcgctgaagaggcgccgctgcacaagctgggcagcggccagtgggacaaggccaag
cgcaaagccgccgagcaggtgcgcgacgcggcggccgagctgctgaacatctacgcccgc
cgcgcggcgcgcgagggccacgccttccgctacagccccacggactacgagcaattcgcc
gccgatttcggctttgaagaaaccgccgaccagaaagccgccatccacgccgtggtgcag
gacatgatcagcccacagccaatggaccgcctggtctgtggcgacgtgggctttggcaag
accgaagtggcgctgcgcgccgccttcgtggccgtgaccggcggcaagcaggtggcgctg
ctggcgcccaccacgctgctggccgagcagcactaccagacgctggtagaccgctttgcc
aagtggccggtgaagatcgccgagatgagccgctttcgcagtgccaaggagatcaccgcc
gcgctgaaaggcgtggccgacggcagcgtggacatcgtggtcggcacgcacaaactgttg
tcggaaaaaacgcagttcaaaaacctgggcctgctgatcatcgacgaggagcaccgcttt
ggcgtgcgccacaaggagcagatgaagcagctgcgcgccgaggtggacgtgctcacgctg
acggccacgcccatcccgcgcaccatgggcatggcgctggaaggcctgcgcgacctgagc
gtgattgccaccgcgccgcagcggcgcctggccatcaaaaccttcgtgcgcaacgaaggc
agcggcgtgatccgcgaggcggtgctgcgcgagctgaaacgcggcgggcaggtgtacttc
ctgcacaacgaggtcgagaccatcgaaaaccggcgccagaagctggaagaaatgctgccc
gaagcgcgcatcgccgtggcccacggccagatgcccgagcgcgagctggaacgcgtgatg
cgcgacttcgtggcccagcgcaccaacgtgctgctgtgctcgaccatcatcgaaaccggt
atcgacgtgcccacggccaacaccatcgtcatcagccgcgccgacaagttcggcctggcg
cagctgcaccagctgcgcgggcgcgtggggcgcagccaccatcaggcgtatgcgtatttg
atggtgcccgagatcgagggcctgaccaagcaggccgcccagcggctggacgcgattcag
cagatggaagagctgggcagcggcttctacctggctatgcacgacctggaaatccgcggc
gccggcgaagtgctgggcgaaaaccagagcggcaacatgatggaagtgggctttcagctc
tacaacgagatgctggccgaggccgtgcgctcgctgaaggcgggcaaagagcccgacctg
ctgtcgcccatgcaggcggccaccgacatcaacctgcatgcccccgcgctgctgccgggc
gactactgcggcgacgtgcacctgcgcctgtcgttctacaagaaattcgccaccgcgcgc
agcaacgaccagatcgacacgctggtggaagagctggtggaccgcttcggcaagctgccg
gcgcaggcgcagacgctgatcgacgtgcaccgcctgcgcgtgctgtcgcaggcctatggc
gtgcagaaggtggacgcggcgccgggggtgatcaacatcagcttcaagcccaacccgccg
atcgacgcgatggccatcatccgcatgatccagaagaacaagcacatcaagctggcgggc
aacgacaagctgcgcatcgagaaagaactggccgagccgaaggaccgcgcccagatggtg
cgcgacgtgctgcgcagcctggggcagccggtggcggcgcagccaaccgcctga
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