Ottowia oryzae: C6570_11240
Help
Entry
C6570_11240 CDS
T05363
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
otk
Ottowia oryzae
Pathway
otk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
otk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C6570_11240 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otk03400
]
C6570_11240 (ligD)
Enzymes [BR:
otk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C6570_11240 (ligD)
DNA repair and recombination proteins [BR:
otk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C6570_11240 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AVO34737
UniProt:
A0A2S0MG11
LinkDB
All DBs
Position
complement(2454918..2457650)
Genome browser
AA seq
910 aa
AA seq
DB search
MPATRRAKAKSTQQKTRPAPVQIAPGATKSEASAPPSPLARYHAKRDFRRTPEPEGAVAA
PAAEGLRYVIQKHWASHLHYDLRLELDGTMHSWAVPKGPSLDPADKRLAVQVEDHPIAYN
RFEGQIPAGQYGAGRVIVWDRGSWSPVGDPVAGLAKGHLKFDLHGIKLRGRWALVRLKDA
NAKQPPWLLIKDRDGESRPPPYSVTDALPDSVGPSDEDARAAPASPPGALTPPLNTPANT
ASATPDAPGKAKRTRANPAPRPARASALPTDLAPQLAQARSAPPEDAAAWQWEMKFDGYR
LLARVDATGAVRLVTRNGLDWSARMPEVARALAALGLAGGWLDGEVVMPGASGMPDFAAL
QRAFEARRTGDLVYYLFDAPWLRGTDLTDLPLAERRARLVAALPALAGNGTVRLSAVLPP
EPRSLLASACGMGLEGVIGKRLDAPYRNGRSDAWIKLKCGQEDEFIIAGFTTGQGARAAQ
GHLGALVLAAHDPDHPQGPLRWAGNVGSGFTGAALAALQRRLAPLHRGSSPLAPGDQVPG
RVQWVQPELVAQVRHAGITPQGHVRQAVYRGLREDKAASEVVLPQIDKPNQPLAQMQPTP
AAIQSGASMDSDNVLVGQQLTHPERVIDPASGTTKLDLARYYATVAPLIQPHLLHRPVAL
LRAPDGLGGELFFQKHAQGQPLAGVTQLPAALDPGHAPLMAIDSAQALLAVVQMNTVELH
TWNATADKIERPDRLVIDLDPGEGVPWAKVQEAAQLTRTLLTELALVPFLKTSGGKGLHV
VVPIKRLYDWDAVKDFSRALTEHLARLMPDRFTAISGPKNRVGRIYPDYLRNGRGATTAA
AWSARARPGMGVSVPIGWDELARVTGGAHWTVGTIGPRLRIGNAPWGDWASAARPIGAAA
RRLKSADTCR
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctactcgccgtgcgaaggccaagtctacgcaacaaaaaacgcggccagcgccc
gtccagattgcgccaggagctaccaaatctgaagcatccgcgccacccagcccgctggcc
cgctaccacgccaagcgggatttccgccgcacgccagagcccgagggcgccgtggctgcg
ccagcggcagaggggctgcgctacgtcattcaaaagcactgggccagccacctgcactac
gacttgcggctggagctggacggcaccatgcacagctgggccgtgcccaagggccccagc
ctggacccggccgacaagcgcctggccgtgcaggtggaagaccaccccatcgcctacaac
cggttcgaggggcagattcccgccgggcagtacggcgcgggccgcgtcatcgtgtgggac
cgcggcagctggtcgccggtgggcgacccggttgcgggcctggccaaagggcaccttaag
tttgacctgcacggcatcaagctgcgcggccgctgggcgctggtgcggctgaaagacgcc
aacgccaagcaaccgccctggctgctgatcaaggaccgcgacggtgagtcccgcccgccg
ccctacagcgtgaccgatgcgctgcccgattcggtgggaccgtcagatgaagacgcgcgc
gccgcaccggcaagcccgccgggcgccttgacgccgcccttaaacacgcccgcaaacacg
gcttccgccacgccagatgcaccaggcaaggcaaagcggacgcgggccaaccccgcaccc
cgcccggcacgcgcttctgccctgcccaccgatttagcgccgcaactcgcccaagcccgc
agcgcaccgcctgaagacgccgccgcgtggcagtgggagatgaagttcgacggctatcgc
ctgctggcccgcgtggacgcgactggcgccgtgcgcctggtcacccgcaacgggctggac
tggtcggcgcgcatgcccgaggtggcgcgcgccttggctgcgctgggcttggcgggcggc
tggctggacggcgaagtcgtgatgcccggcgccagcggcatgcccgactttgccgcgctg
cagcgcgcgtttgaagcgcggcgaaccggcgatttggtctattacctgttcgacgcgccg
tggctgcgcggcaccgatttgaccgacttgcccctggccgaacgccgcgcgcgcctcgtc
gctgccctgcccgccttggccggcaacggcacggtgcgcctgtccgccgtgctgccgccc
gagccgcgcagcctgctggccagcgcctgcggcatggggctggaaggggtgatcggcaag
cgcctggacgcgccctaccgcaacggccggtcggacgcgtggatcaagctgaaatgcggg
caagaggatgaattcatcatcgccggcttcaccactggccaaggcgcgcgcgccgcccaa
ggccatctgggcgcattggtgctggccgcacacgacccagatcacccgcaaggcccgttg
agatgggctggcaacgttggcagcggcttcacgggcgcagcgctcgccgcgctgcaacgt
cgcctggcaccgcttcaccgaggcagcagcccactggcgcccggcgaccaggtgcctggg
cgggtgcagtgggtgcagcccgagttggtggcacaggttcgccacgcagggatcactccg
caaggtcacgtgcggcaggcggtgtaccgcggcctgcgcgaggacaaagccgccagcgaa
gtggtgctaccccaaattgacaaaccaaatcagccgctggcgcagatgcagcctacgcca
gcagctattcaatcaggagcaagcatggactctgacaatgtgctggtcggccagcagctg
acgcaccccgagcgggtgatagaccccgccagcggcaccaccaagctggatctggcgcgc
tactacgccaccgtggcgccgctcatccagccgcacctgctgcaccgcccggtggccttg
ctgcgcgcgccggacgggctggggggcgagctgttctttcaaaagcacgcgcagggtcag
ccgctggccggggtgacgcagctgcccgccgcgctggacccaggccatgccccgctgatg
gccatcgacagcgcccaggcgctgctggccgtggtgcagatgaacactgtcgagctgcac
acctggaacgccaccgccgacaagatcgagcggcccgaccgcctggtgatcgacctggac
cccggcgaaggcgtgccctgggccaaggtgcaggaagccgcgcagctcacccgcaccctg
ctgaccgagctggcgctggtgcctttcctcaagaccagcggcggcaaggggctgcacgtg
gtggtgcccatcaagcgcctttacgactgggacgcggtgaaggatttcagccgcgcgctg
accgaacacctggcccgcctgatgcccgaccgcttcaccgccatcagcggccccaagaac
cgcgtgggccgcatctaccccgactacctgcgcaacggccggggcgcgaccaccgccgct
gcatggtcggcccgcgcccggcccggcatgggcgtatcggtgcccatcggctgggacgaa
ctggcccgcgtgaccggcggcgcgcactggacagtgggcaccatcgggccgcgcctgcgc
atcggcaacgcgccttggggtgactgggccagcgctgcccggcccattggtgcagcagcg
cggcggctgaaaagcgccgatacgtgccgataa
DBGET
integrated database retrieval system