Octadecabacter temperatus: OSB_15050
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Entry
OSB_15050 CDS
T04001
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
otm
Octadecabacter temperatus
Pathway
otm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
otm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OSB_15050 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otm03400
]
OSB_15050 (mfd)
Enzymes [BR:
otm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OSB_15050 (mfd)
DNA repair and recombination proteins [BR:
otm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OSB_15050 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_30
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AKS46057
UniProt:
A0A0K0Y5E8
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Position
complement(1467837..1471274)
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AA seq
1145 aa
AA seq
DB search
MTKPSHITVSGAPEGFDARLILAEAEKGAVVHVCRDDKRLEATRAALAFFAPDMPVIVFP
GWDCLPYDRVSPNADVSAARMAVLAGLAHGMPERFVLLTTLNAATQKVPARSVLREAAFT
ARVGSRIDEPALRAFLVRMGFVQSPTVMEPGDYAVRGGIIDIYPPGQVGPVRLDLFGDDL
DGARRFDPATQRTTEKLDVVELAPVSEVILDEAAITRFRQTYRLEFGAAGSDDPLYEAVS
AGKKHAGVEHWMGFFHEKLDTLFDYVKGATITLDEQNAAMREARWVSIDDQYDARREAMV
AKGRMDSVYKPAKPDGLYLDGAAWDAALAGFRVLQFGALPLPSGPNVIDAGGRIGRNFSP
ERQQESVSLFGALAQHIKAKLGDGPVVIASYSEGARERLMGLIEDEGLAETIPVTDFSRV
GKTGLHLAVWALEHGFEAKGLTVVSEQDVLGDRLIRQTKKKRRAENFLTETQSLSPSDLV
VHVDHGVGRYLGLEVVTAAGAAHECLLLEYAENSKLYLPVENIELLSRYGHEVGLLDKLG
GGAWQAKKAKLKERIREMAERLIRVAAERALRTAPALTPPDGMWDQFLARFPYSETDDQM
QAIEDVLEDLGSGLPMDRLVCGDVGFGKTEVAIRAAFVAAMSGVQVAIVAPTTLLARQHY
KGFAERFRGFPINVRTLSRFVSAKDAALTRDGITKGTVDIVIGTHALLAKSIRFKDLGLL
VIDEEQHFGVQHKERLKQMRTDIHVLTLTATPIPRTLQLSLSGVRELSIIGTPPVDRLAI
RTYVSEFDTVTIREALLREHYRGGQSFFVVPRISDLEEIEDFLKREVPEVSFVTANGQMA
AGELDDRMNAFYDGKFDVLLATTIVESGLDIPTANTMIVHRADMFGLAQLYQIRGRVGRS
KTRAYAYLTYKPRQKLTPQAEKRLRVLGSIDSLGAGFTLASQDLDIRGAGNLLGEEQSGQ
MREVGYELYQSMLEEQIAKIKSGEVTLVDDGKWAPQINLGVPVLIPEDYVPDLDVRLGLY
RRLSELTTKVELEGFAAELIDRFGKLPKEVNTLMLVVRIKAMCKRAGISQLDAGPKGAVL
RFHNDKFASPVGLVEFIEDERGTAKVKDNKIVLQRDWATDRDKIQGAFNIARDLAAKVKA
AKKAP
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaccatcacacatcaccgtttctggcgcgccggaaggctttgacgcccgtttg
atcttggccgaggccgaaaagggcgcggtggtccacgtgtgtcgtgatgacaaacgcctt
gaggcgacgcgcgcggctttggcgttcttcgcgcccgatatgcctgtgattgtgtttccg
ggctgggattgtttgccctatgaccgtgtgtcgcccaatgcggatgtgtccgctgcccgg
atggcggtgctggcagggctggcacatgggatgccggaacgctttgttctgctgacgacg
ctgaacgccgcgacgcaaaaggtgccggcgcgatccgtcctgcgagaggcggcgttcacc
gcacgcgttgggtcacgcatcgacgaacccgcgcttcgtgcgtttttggtgcgcatggga
tttgttcaaagccccacagtgatggaaccgggcgattatgccgtgcgcggtggcattatt
gatatttaccctccggggcaggtcggccctgtgcgccttgatctgtttggcgatgatcta
gacggcgcacgtcgctttgatccagccacacaacgcacgaccgaaaagctggatgtggtt
gaacttgcgcctgtgtccgaggttattctggacgaagctgcgatcacgcggttccgccag
acgtatcgtttggaattcggggctgctgggtctgatgatccgctctatgaagctgtgtca
gcaggcaaaaagcacgcaggtgtcgaacattggatggggttctttcacgaaaagctcgac
acgctgtttgactacgtaaaaggcgcaaccatcacgctggatgaacagaacgccgccatg
cgtgaggcccgttgggtttccattgacgatcaatacgatgcgcgccgcgaagcgatggtc
gccaaggggcggatggattccgtttataagcctgccaaaccagacggactatatctggat
ggtgcagcatgggatgcagcgcttgctgggtttcgtgtgctgcaattcggggcacttcct
ttgccgtccggcccgaacgttattgatgcaggcgggcgtattggccgtaacttctcgcca
gagcgtcagcaagaaagtgtgagccttttcggcgctttagcacaacatattaaagcgaag
ctgggtgatggacccgttgtaatagcgtcctattctgaaggtgcacgcgaacgtttgatg
ggtctgattgaagatgaaggcctcgctgaaaccatccctgtgacggatttctcacgcgtt
gggaaaacgggcctgcatttggccgtctgggcgctggaacacgggtttgaagccaagggc
ctgaccgttgtctccgaacaggacgtgcttggtgatcgtctgatccgccaaaccaaaaag
aaacgccgcgccgagaacttcctcactgaaacccaaagcctcagcccgagcgatttggtc
gttcatgtagaccacggggtcgggcgctatttggggcttgaagttgtcacggcggcgggg
gctgcgcacgaatgtctgcttctggaatatgccgaaaattcaaagctttacctgccagtc
gaaaacattgaactgctgtcgcgctacggccatgaggtcgggttgctcgacaaattgggc
gggggtgcgtggcaggctaagaaagctaagctgaaagaacgcattcgcgagatggcggaa
cgtcttattcgtgtggcggctgaacgtgcgttgcgcacagcccccgcactaacgccgcca
gatggcatgtgggatcagttccttgcacgctttccgtattcggaaaccgacgaccagatg
caggcgattgaggatgttcttgaggaccttggctctggactgccgatggaccgccttgtt
tgtggcgatgttggctttggtaaaaccgaagtcgcgatccgcgccgcgtttgttgccgcg
atgtccggcgttcaggtggcaattgttgcgccaacgacgctgttggcgcgtcagcactat
aaagggttcgcagagcgcttccgtggttttccgattaatgtcagaaccttatcgcgcttt
gttagtgcaaaagatgcggcgcttacccgcgatgggatcactaagggaacggttgatatc
gtcatcggcacccatgcgttgctggcgaaatctattcgcttcaaggacctaggcctgctg
gtgatcgacgaagaacaacacttcggtgtgcaacacaaagaacgcctaaagcagatgcgc
acggacattcatgtgctgacgctgacggccacgccgatcccgcggacgttgcaattgtcg
ctctctggagtgcgcgaactcagcattattggcacgccacctgtcgatcgactggcgatc
cgcacctatgtgtcggaattcgacacggtcaccatccgcgaggccttgctgcgcgaacat
tatcgtggcggtcagtcgttcttcgtcgtcccgcgcatttctgatctggaggagattgaa
gatttcctcaaacgcgaagtgcccgaagtgtcctttgtcaccgcgaacggccagatggca
gcgggtgaactcgatgatcggatgaacgcgttttatgacggcaagttcgacgtgctgctg
gcgacaacgattgtggaatccggcctcgatattccgacggcgaacaccatgatcgtgcac
cgtgcagatatgttcggccttgcgcagctgtaccaaattcgcgggcgggtcgggcgttcg
aaaacccgtgcctatgcctatctaacctacaaaccgcgccaaaagttgacaccgcaggcg
gaaaaacgtcttcgggttctgggatcaatcgacagccttggggctgggttcacgctggcg
tcgcaggatttagatattcgcggggctggtaacctgctcggcgaagaacagtccggccaa
atgcgcgaagtcggctatgaattgtaccagtccatgctggaagagcagatcgccaagatt
aagtcgggcgaagtgacactggtcgacgacggcaaatgggcgccgcagatcaaccttggt
gtcccagtgcttatcccagaggactacgtgcctgatctggatgtgcgcctcggcctttat
cgtcgcctgtctgaactgacgacgaaggtggaacttgaaggctttgctgccgaattgatc
gaccgtttcggcaaactgccgaaagaagtgaacacattgatgctggtcgtacgtatcaaa
gcaatgtgtaagcgggcagggatcagccaactggatgcgggtccgaagggcgccgtgctg
cggttccacaatgacaaattcgcctcaccggtggggctggttgaattcatcgaggacgaa
cgtggaacggccaaggtgaaggacaacaagatcgtcctgcaacgtgactgggcaactgat
cgcgacaagatccaaggcgcgttcaacatcgctcgtgatttggctgcaaaggtgaaagcg
gctaagaaggcgccttag
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